Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12b08
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 227 1e-60
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 32 0.060
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos... 30 0.32
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 27 1.7
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac... 27 2.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.0
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 26 4.0
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 4.0
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 26 4.0
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces... 26 4.0
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 26 5.2
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 6.9
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 6.9
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 25 6.9
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 25 6.9
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 9.1
SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|... 25 9.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 9.1
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 227 bits (554), Expect = 1e-60
Identities = 101/154 (65%), Positives = 124/154 (80%), Gaps = 1/154 (0%)
Frame = +1
Query: 178 LKRPKTGDAICKECFFWAFETEIHYTITKGKLFNKGDSVAVAASGGKDSTVLAHTLKTLN 357
L RPKTG ICKECF++ FETEIH I + KLF +G+ V + ASGGKDSTVLA+ +K LN
Sbjct: 16 LVRPKTGQKICKECFYYVFETEIHNVIIENKLFVRGERVGIGASGGKDSTVLAYVMKLLN 75
Query: 358 ERYNYGLNLMLLSIDEGITGYRDDSLETVKQNRDDYEMPLKILSYKDLY-GWTMDEIVAQ 534
ERY+YGL L L+S+DEGI GYRDDSL+TVK+N+ Y +P+KI+SY DLY GWTMD +VA+
Sbjct: 76 ERYDYGLELYLISVDEGIRGYRDDSLDTVKRNQQQYGLPMKIVSYADLYDGWTMDNVVAR 135
Query: 535 IGRKNNCTFCGVFRRQALDRGAAMLNVKCIATGH 636
IG KNNCT+CGVFRRQALDR A L++ + TGH
Sbjct: 136 IGTKNNCTYCGVFRRQALDRAALSLDIHHLVTGH 169
>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 320
Score = 32.3 bits (70), Expect = 0.060
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = -3
Query: 238 FRMPKKNILYKLRPLFSASSELHYFRNPSYK 146
+ +PK++ILY++R LF+ SS HY +N S K
Sbjct: 284 YSLPKQSILYEIR-LFAMSSLWHYEKNKSIK 313
>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 29.9 bits (64), Expect = 0.32
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 205 ICKECFFWAFETEIHYTITK-GKLFNKGDSVAVAASGGKDSTVLAHTLK-TLNERYN 369
IC W+ E + I + K+ D V A SGG DSTV + LK + +R++
Sbjct: 209 ICHAKPNWSMENFVDKEILRIRKMIGPSDHVIGAVSGGVDSTVASKVLKEAIGDRFH 265
>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -3
Query: 568 HHKMYNYFFFQFVPLFHPL-STHINPCKKVF*AAFHN 461
HH +NY + QF LF L S++ P +++F A N
Sbjct: 261 HHMYFNYNYGQFFTLFDRLCSSYRQPDQELFDAELRN 297
>SPAC4G9.13c |vps26|pep8|retromer complex subunit
Vps26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/78 (24%), Positives = 38/78 (48%)
Frame = +1
Query: 235 ETEIHYTITKGKLFNKGDSVAVAASGGKDSTVLAHTLKTLNERYNYGLNLMLLSIDEGIT 414
ET + I G N+G+++ + + L T + +N++++ L L+ +DE
Sbjct: 224 ETITRFQIMDGNP-NRGETIPLRMF--LNGYALTPTFRDVNKKFSVRYYLSLILVDEDQR 280
Query: 415 GYRDDSLETVKQNRDDYE 468
Y S T+ + RD++E
Sbjct: 281 RYFKQSEITLWRRRDEHE 298
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 397 IDEGITGYRDDSLETVKQNRDDYEMPLKILSYKDL 501
++ GY DD + K N +P +SYKDL
Sbjct: 662 VEAEFLGYSDDKIHLHKTNGVKISVPSAKMSYKDL 696
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 26.2 bits (55), Expect = 4.0
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +1
Query: 334 AHTLKTLNERYNYGLNLMLLSIDEGITGYRDDSLETVKQNRDDYEMPLKILSYKDLYGWT 513
A LK +RY ++ LL IDE + ++LE + R D +M +I + L GW
Sbjct: 20 AEDLKIFIKRYERSVDSTLLEIDEN----KREALEKYIEER-DRKMKYEIECNERLQGWK 74
Query: 514 MDEIVAQIGRKNN 552
I +I + +
Sbjct: 75 KLAIEREISEEQS 87
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 334 AHTLKTLNERYNYGLNLMLLSIDE 405
A T+K L E++N G++ LLS DE
Sbjct: 1111 ASTIKHLKEQFNEGVDYDLLSSDE 1134
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 26.2 bits (55), Expect = 4.0
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +1
Query: 334 AHTLKTLNERYNYGLNLMLLSIDEGITGYRDDSLETVKQNRDDYEMPLKILSYKDLYGWT 513
A LK +RY ++ LL IDE + ++LE + R D +M +I + L GW
Sbjct: 20 AEDLKIFIKRYERSVDSTLLEIDEN----KREALEKYIEER-DRKMKYEIECNERLQGWK 74
Query: 514 MDEIVAQIGRKNN 552
I +I + +
Sbjct: 75 KLAIEREISEEQS 87
>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 366
Score = 26.2 bits (55), Expect = 4.0
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = +1
Query: 160 CGNNAVLKRPKTGDAICKECFFWAFETEI--HYTITKGKL-FNKGDSVAVAASGGKDSTV 330
C N A + DA+C CF E +I + + + L K +A SGG S
Sbjct: 17 CDNKATVLTKS--DAVCDSCFVRRIENKIRRQFELVRPNLQGRKSKRAMLAISGGISSMA 74
Query: 331 LAHTLKTLNE 360
+ T L++
Sbjct: 75 MLETANYLSK 84
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 362 RSLRVLSVCARTVESLPPEAATATESPLLNNL 267
RSLR L +C R +S PP+ + N L
Sbjct: 733 RSLRTLGLCYRVFDSWPPKDIPTNDEDSSNPL 764
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +1
Query: 430 SLETVKQNRDDYEMPLKILSYKDLYGWTMDEI 525
+LET+++ D L++L Y L+ W + +
Sbjct: 2694 TLETLRREEDSLLSVLEVLRYDPLFSWLISPL 2725
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -2
Query: 341 VCARTVESLPPEAATATESPLLNNLPFVMV**ISVSNAQKKHSLQIASP 195
+ + TVE + P A T TE+ LPF ++ ++ +++I SP
Sbjct: 112 ITSGTVEIVEPTAGTVTETITSGTLPFTTT--LAQASGTVSGTVEIVSP 158
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 6.9
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +3
Query: 66 SEKSVVNQKTKSNAVXXXXXSH*NASAL*EGLRK*CSSEEAENRGRNL*RMFFLGIRNRN 245
S+KS+ N +KS+ V ASA K ++ R+L ++ +G +R+
Sbjct: 423 SKKSLRND-SKSDDVGNSTHRFSTASAASTSAVKTEKEKKMSAPRRSLDKLIRIGSLHRH 481
Query: 246 SLHHHKRQIIQ 278
HHHK +I+
Sbjct: 482 HHHHHKTDLIE 492
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -2
Query: 341 VCARTVESLPPEAATATESPLLNNLPFVMV**ISVSNAQKKHSLQIASP 195
+ + TVE + P A T TE+ LPF ++ ++ +++I SP
Sbjct: 112 ITSGTVEIVEPTAGTVTETITSGTLPFTTT--LAQASGTVSGTVEIVSP 158
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 9.1
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -1
Query: 315 TTRSSNCNGVSFIE*FAFCDGVVNFCFECPKKTFFTNC-VPCFRPLQ 178
T+ S CNG +F CDG V C + NC C+ P Q
Sbjct: 786 TSISGTCNGATFDASLYVCDGTV-LC-PIVNGVSYQNCNGACYNPSQ 830
>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 537 NLCHYFIHCPPI 502
NL +FIHCPP+
Sbjct: 3 NLSGWFIHCPPL 14
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 9.1
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -2
Query: 443 TVSRLSSRYPVIPSSMESNIRFKP*LYRSLRVLSVCARTVE-SLPPEAATATESPLLNN 270
TVS +SS P +S +S + L SL + S +RT+ S E T+ +P +++
Sbjct: 765 TVSNISSNLPSATASSQSQLTNSSTLATSLYLSSSSSRTISTSSTNEYNTSFHAPTVSS 823
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,782
Number of Sequences: 5004
Number of extensions: 57769
Number of successful extensions: 175
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -