Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12b08
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0597 - 23526705-23526749,23526794-23526905,23527068-235271... 104 5e-23
02_05_0840 - 32118332-32118376,32118420-32118531,32119074-321191... 104 7e-23
12_02_0943 - 24662147-24662195,24662440-24662834,24662979-246630... 31 0.58
11_06_0341 - 22507098-22507982,22508616-22508783,22518740-225188... 30 1.3
03_04_0085 - 17182662-17182963,17183044-17183101,17183564-171836... 30 1.3
11_06_0553 - 24920428-24921057,24921149-24921276,24921372-249214... 28 7.1
05_01_0425 - 3347604-3347708,3348394-3348466,3349917-3350581,335... 28 7.1
02_05_0278 + 27404914-27404947,27405088-27405228,27405747-274057... 28 7.1
>01_05_0597 -
23526705-23526749,23526794-23526905,23527068-23527134,
23527439-23527566,23527638-23527750,23527827-23527972,
23528419-23528525,23528667-23528873,23530878-23531129,
23531324-23531406
Length = 419
Score = 104 bits (250), Expect = 5e-23
Identities = 46/58 (79%), Positives = 50/58 (86%)
Frame = +1
Query: 463 YEMPLKILSYKDLYGWTMDEIVAQIGRKNNCTFCGVFRRQALDRGAAMLNVKCIATGH 636
Y +PLKI+SYKDLYGWTMD+IV IG KNNCTFCGVFRRQALDRGAA+L V I TGH
Sbjct: 226 YGLPLKIISYKDLYGWTMDDIVKAIGLKNNCTFCGVFRRQALDRGAALLKVDKIVTGH 283
Score = 54.0 bits (124), Expect = 1e-07
Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 18/117 (15%)
Frame = +1
Query: 148 CKRGCGNNAVLKRPKTGDAIC------------------KECFFWAFETEIHYTITKGKL 273
C R A LKRPKT + +C +ECF+ FE EIH TI + L
Sbjct: 142 CTRCSERKAALKRPKTLEQLCLYAPHIFRVVCPDVSRQSRECFYIVFEDEIHQTIVENNL 201
Query: 274 FNKGDSVAVAASGGKDSTVLAHTLKTLNERYNYGLNLMLLSIDEGITGYRDDSLETV 444
F GD VA+ ASGGK +A T L YGL L ++S + DD ++ +
Sbjct: 202 FKPGDRVAIGASGGK----VADTTDLL----QYGLPLKIISYKDLYGWTMDDIVKAI 250
>02_05_0840 -
32118332-32118376,32118420-32118531,32119074-32119196,
32119267-32119379,32119460-32119605,32120048-32120162,
32120360-32120473
Length = 255
Score = 104 bits (249), Expect = 7e-23
Identities = 46/58 (79%), Positives = 50/58 (86%)
Frame = +1
Query: 463 YEMPLKILSYKDLYGWTMDEIVAQIGRKNNCTFCGVFRRQALDRGAAMLNVKCIATGH 636
Y +PLKI+SYKDLYGWTMD+IV IG KNNCTFCGVFRRQALDRGAA+L V I TGH
Sbjct: 86 YGLPLKIVSYKDLYGWTMDDIVKAIGLKNNCTFCGVFRRQALDRGAALLKVDKIVTGH 143
Score = 71.3 bits (167), Expect = 6e-13
Identities = 44/100 (44%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Frame = +1
Query: 148 CKRGCGNN-AVLKRPKTGDAICKECFFWAFETEIHYTITKGKLFNKGDSVAVAASGGKDS 324
C R CG A LKRPKT + IC+ECF+ FE EIH TI LF GD VA+ ASGGK
Sbjct: 20 CTR-CGERKAALKRPKTLEQICRECFYVVFEDEIHQTIVDNNLFKPGDRVAIGASGGK-- 76
Query: 325 TVLAHTLKTLNERYNYGLNLMLLSIDEGITGYRDDSLETV 444
+A T L YGL L ++S + DD ++ +
Sbjct: 77 --VADTTDLL----QYGLPLKIVSYKDLYGWTMDDIVKAI 110
>12_02_0943 -
24662147-24662195,24662440-24662834,24662979-24663057,
24663129-24663250,24663363-24663449,24663543-24663891,
24664227-24664540
Length = 464
Score = 31.5 bits (68), Expect = 0.58
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +1
Query: 160 CGNNAVLKRPKTGDAICKECFFWAFETEIHYTITKGKLFNKGDSVAVAASGGKDSTV 330
CG A G +C ECF + +T + DSV +A SGG S V
Sbjct: 50 CGGGAAAVAVAGGLGLCGECFRANLLGKFKLAVTSNAMVRPTDSVLLAFSGGPASRV 106
>11_06_0341 -
22507098-22507982,22508616-22508783,22518740-22518893,
22519396-22519728,22521106-22521374
Length = 602
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +1
Query: 319 DSTVLAHTLKTLNERYNYGLNLMLLSIDEGITGYRD--DSLETVK 447
DS L+H L + E Y G +L L+ID+G TG+ + DSL T K
Sbjct: 383 DSKNLSHELLSAIE-YLTGCSLKSLAIDDGFTGFLNLMDSLSTPK 426
>03_04_0085 -
17182662-17182963,17183044-17183101,17183564-17183638,
17183730-17183864,17183986-17184165,17184315-17184365,
17184537-17184637,17185562-17185620,17185701-17185816,
17186668-17186853,17187337-17187399,17187440-17187521,
17188221-17188312,17189153-17189296,17190056-17190136,
17190815-17190898,17191465-17191566,17191922-17192017,
17192239-17192299,17192418-17192521
Length = 723
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 358 ERYNYGLNLMLLSIDEGITGYRDDSLETVKQNRDD 462
ER++ G+ + L++DE + D+SLE ++Q DD
Sbjct: 16 ERFDLGVLVGDLALDEDVASDEDESLEGLRQELDD 50
>11_06_0553 -
24920428-24921057,24921149-24921276,24921372-24921409,
24921522-24921734,24921906-24921998,24922089-24922276,
24922396-24922502,24922614-24922775,24922870-24922953,
24923060-24923168,24923340-24923468,24923504-24923556,
24923654-24923759,24924082-24924189
Length = 715
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 259 TKGKLFNKGDSVAVAASGGKDSTVLAHTLKTLNERYNY 372
+KG LF KG+ A A+G VL +K E N+
Sbjct: 51 SKGTLFLKGEGQAQEAAGSPQGVVLEEEIKVKEEFNNH 88
>05_01_0425 -
3347604-3347708,3348394-3348466,3349917-3350581,
3350609-3351088,3351253-3351534
Length = 534
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 406 GITGYRDDSLE-TVKQNRDDYEMPLKILSYKDLYGWTMDEIVAQIGRKNNCTFCG 567
G+ G R + +V + D+ M ++ GW E + ++ R+ +CT CG
Sbjct: 372 GLAGMRTTMMAASVAEANDNEGMEFDRGGEEEAGGWKGKEAMGRVSRRRSCTPCG 426
>02_05_0278 +
27404914-27404947,27405088-27405228,27405747-27405772,
27406036-27406071,27406296-27406976
Length = 305
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 343 LKTLNERYNYGLNLMLLSID-EGITGYRDDSLETVKQNR 456
+ T+N R++YG+++ +++ ++GYR D L + +R
Sbjct: 111 IPTVNARFDYGVSIFVMTYSFVAVSGYRVDDLAALVLDR 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,584,236
Number of Sequences: 37544
Number of extensions: 337575
Number of successful extensions: 864
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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