Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12b08
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067616-4|AAC19193.1|  373|Caenorhabditis elegans Hypothetical ...   225   3e-59
AC024202-8|AAK93869.2|  816|Caenorhabditis elegans Hypothetical ...    38   0.008
U70844-2|AAB09094.2|  203|Caenorhabditis elegans Hypothetical pr...    31   0.69 
U41021-4|AAA82334.1|  348|Caenorhabditis elegans Uncoordinated p...    30   1.2  
AF035583-1|AAD09435.1|  348|Caenorhabditis elegans UNC-97 protein.     30   1.2  
Z66515-10|CAI70410.1|  510|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z66515-9|CAA91346.1|  519|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AL110498-2|CAB54468.1|  254|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z48544-6|CAE48820.1|  214|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z48544-5|CAA88439.1|  216|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>AF067616-4|AAC19193.1|  373|Caenorhabditis elegans Hypothetical
           protein F29C4.6 protein.
          Length = 373

 Score =  225 bits (549), Expect = 3e-59
 Identities = 102/168 (60%), Positives = 128/168 (76%), Gaps = 2/168 (1%)
 Frame = +1

Query: 139 PVPCKRG--CGNNAVLKRPKTGDAICKECFFWAFETEIHYTITKGKLFNKGDSVAVAASG 312
           P PC+ G  C N A +++ K G  +C  CF   FE ++H  I   KLF +G+ VA+ ASG
Sbjct: 7   PPPCQSGSGCSNPAKIRKAKDGAQLCGPCFSRNFEDDVHEAIVNNKLFKRGERVAIGASG 66

Query: 313 GKDSTVLAHTLKTLNERYNYGLNLMLLSIDEGITGYRDDSLETVKQNRDDYEMPLKILSY 492
           GKDSTVLA+ +KTLN+R++YGL+L LLSIDEGI GYRDDSL  V++NR +Y +PL ILSY
Sbjct: 67  GKDSTVLAYVMKTLNDRHDYGLDLQLLSIDEGIKGYRDDSLLAVEKNRVEYGLPLTILSY 126

Query: 493 KDLYGWTMDEIVAQIGRKNNCTFCGVFRRQALDRGAAMLNVKCIATGH 636
           +DLYGWTMD+IVA+IG+KNNCTFCGVFRRQALDRGA  +    + TGH
Sbjct: 127 RDLYGWTMDDIVAKIGKKNNCTFCGVFRRQALDRGAFKIGATKLVTGH 174


>AC024202-8|AAK93869.2|  816|Caenorhabditis elegans Hypothetical
           protein Y71H2B.5 protein.
          Length = 816

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 5/127 (3%)
 Frame = +1

Query: 268 KLFNKGDSVAVAASGGKDSTVLAHTLKTLNERYN----YGLNLMLLSIDEGITGYRDDSL 435
           K+   GD V V  SGGKDS  L H L+   +R N        L  +++D G   Y    L
Sbjct: 573 KMIRDGDKVLVCLSGGKDSLSLLHILRHYQQRCNKARSTSFELGAITVDPGSAEYNPRPL 632

Query: 436 -ETVKQNRDDYEMPLKILSYKDLYGWTMDEIVAQIGRKNNCTFCGVFRRQALDRGAAMLN 612
            E  ++   DY         +D+ G          G ++ C FC   +R  L   A +  
Sbjct: 633 IEYCRRLNIDY-----FYEEQDIIGAAR----KTPGLRSICAFCSRMKRGRLAAAAQLHG 683

Query: 613 VKCIATG 633
              +A G
Sbjct: 684 WNVLAMG 690


>U70844-2|AAB09094.2|  203|Caenorhabditis elegans Hypothetical
           protein ZK154.4 protein.
          Length = 203

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 292 VAVAASGGKDSTVLAHTLKTLNERYNYGLNLMLLSIDEGITGYRDDSLE-TVKQNRDDYE 468
           V +A  GG   T    +    NE  N G    L  ID+ + G+ DD L+ T+K++R+++ 
Sbjct: 120 VVLAPRGGFRDTAPKKSRFDFNEA-NVGATPTLGDIDDDLLGWGDDDLDSTLKEHREEHH 178

Query: 469 MPLK 480
             L+
Sbjct: 179 KQLQ 182


>U41021-4|AAA82334.1|  348|Caenorhabditis elegans Uncoordinated
           protein 97 protein.
          Length = 348

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 243 FCFECPKKTFFTNCVPCFRPLQNCIISATPLTRHWH 136
           +C  C        C  C RP++  +I+A  L +HWH
Sbjct: 192 YCLRCHDTMGIPICGACHRPIEERVIAA--LGKHWH 225


>AF035583-1|AAD09435.1|  348|Caenorhabditis elegans UNC-97 protein.
          Length = 348

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 243 FCFECPKKTFFTNCVPCFRPLQNCIISATPLTRHWH 136
           +C  C        C  C RP++  +I+A  L +HWH
Sbjct: 192 YCLRCHDTMGIPICGACHRPIEERVIAA--LGKHWH 225


>Z66515-10|CAI70410.1|  510|Caenorhabditis elegans Hypothetical
           protein R53.1b protein.
          Length = 510

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/28 (42%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +1

Query: 286 DSVAVAASGGKDSTVLAHTLK-TLNERY 366
           + +A++ +GGKD TVL H L+  ++E+Y
Sbjct: 318 EQIALSFNGGKDCTVLLHLLRLKVDEKY 345


>Z66515-9|CAA91346.1|  519|Caenorhabditis elegans Hypothetical
           protein R53.1a protein.
          Length = 519

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/28 (42%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +1

Query: 286 DSVAVAASGGKDSTVLAHTLK-TLNERY 366
           + +A++ +GGKD TVL H L+  ++E+Y
Sbjct: 327 EQIALSFNGGKDCTVLLHLLRLKVDEKY 354


>AL110498-2|CAB54468.1|  254|Caenorhabditis elegans Hypothetical
           protein Y64G10A.3 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +1

Query: 331 LAHTLKTLNERYNYGLNLMLLSIDEGITGYRDDSLETVKQNRDDYEMPLKILSYKDLYGW 510
           L+H +K +N++Y   +         G+TG R  +  T + ++   E PL   + K L  W
Sbjct: 64  LSHEIKLMNQQYAISMMKSAGHPSNGLTGRRKMARNTTRSSKPPREPPLDFPA-KTLDDW 122


>Z48544-6|CAE48820.1|  214|Caenorhabditis elegans Hypothetical
           protein ZK945.6b protein.
          Length = 214

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = -1

Query: 357 IEGFERMCEDCRVLTTRSSNCNGVS--FIE*FAFCDGVVNFCFECPKKTF 214
           I GF+ MC+D +V    S  C   S   +E   F D  VN    CP   F
Sbjct: 124 ITGFQMMCDDQKVTVVDSLECLAQSEQHLEPVYF-DPRVNLAIPCPPDDF 172


>Z48544-5|CAA88439.1|  216|Caenorhabditis elegans Hypothetical
           protein ZK945.6a protein.
          Length = 216

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = -1

Query: 357 IEGFERMCEDCRVLTTRSSNCNGVS--FIE*FAFCDGVVNFCFECPKKTF 214
           I GF+ MC+D +V    S  C   S   +E   F D  VN    CP   F
Sbjct: 126 ITGFQMMCDDQKVTVVDSLECLAQSEQHLEPVYF-DPRVNLAIPCPPDDF 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,093,408
Number of Sequences: 27780
Number of extensions: 330190
Number of successful extensions: 881
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)