Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12b04
(617 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 31 0.18
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 30 0.23
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 29 0.71
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 29 0.71
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 28 1.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.6
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 5.0
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein... 25 6.6
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 25 6.6
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 6.6
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac... 25 8.8
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p... 25 8.8
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 8.8
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 8.8
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 8.8
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.8
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 30.7 bits (66), Expect = 0.18
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = -3
Query: 531 TTAVVEIAASVIKSTTGPLLDISTVAPATLVDELVSVST---VAVLPSAVTETSAATDLT 361
TTAV E ++S +T +STV P + V + V+T V+ SA T T+++T
Sbjct: 1395 TTAVTETSSSGYYTTIVSSTVVSTVVPGSTVYPVTHVTTTTGVSGESSAFTYTTSSTQYE 1454
Query: 360 FLEGVTSSFQRLTVLVS 310
VT+S+ +V S
Sbjct: 1455 PSTVVTTSYYTTSVYTS 1471
Score = 27.1 bits (57), Expect = 2.2
Identities = 22/85 (25%), Positives = 37/85 (43%)
Frame = -3
Query: 585 EVSAETYSLPSEGEASFATTAVVEIAASVIKSTTGPLLDISTVAPATLVDELVSVSTVAV 406
EV T + + G + TTA E+ + + T +T+ +T+V +V STV
Sbjct: 1369 EVQTTTGATGTAGTETQVTTAT-EVQPTTAVTETSSSGYYTTIVSSTVVSTVVPGSTVYP 1427
Query: 405 LPSAVTETSAATDLTFLEGVTSSFQ 331
+ T T + + + TSS Q
Sbjct: 1428 VTHVTTTTGVSGESSAFTYTTSSTQ 1452
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 30.3 bits (65), Expect = 0.23
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 473 SKGPVVDLITDAAISTTAVVAKDASPSEGSEYVSADTSSSSAIVT 607
S VVD T AA S++ + + + SE S+ TSS++A T
Sbjct: 109 SSSAVVDSATSAAASSSVIPTSSSVVASSSEVASSTTSSAAASAT 153
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 28.7 bits (61), Expect = 0.71
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 591 EDEVSAETYSLPSEGEASFATTAVVEIAASVIKSTTGPLLDISTVAP-ATLVDE 433
EDEV+ E P+E AS ++T VE AA+ + T T AP A L DE
Sbjct: 94 EDEVADE----PAEAPASTSSTPKVETAAAAAPAATPAPAPAQTSAPAAALPDE 143
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 0.71
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 260 DSEASETALPASDAEKSETNTVSLWNDDVTPSKNVKSVAADVSVTADGN 406
DSE++ LP D+ + LWN D K+V+ ++ + + A GN
Sbjct: 182 DSESTPILLPLIDSLNHKPKQPILWNSDFQDEKSVQLISQE--LVAKGN 228
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 5 ENEIIELGSDELNKITNPLINTVDQTVKEKTYLVQAALNALTGFYAKPKSSEGWINDVI 181
ENE + L D + K + LIN ++Q +K V + + K K E N+V+
Sbjct: 528 ENEGLTLKIDSITKEKDRLINELEQRIKSYEVNVSELNGTIDEYRNKLKDKEETYNEVM 586
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 1.6
Identities = 25/117 (21%), Positives = 43/117 (36%)
Frame = +2
Query: 257 VDSEASETALPASDAEKSETNTVSLWNDDVTPSKNVKSVAADVSVTADGNXXXXXXXXXX 436
V S SET+ S T+ S W + + S SVAA V+ T+ +
Sbjct: 905 VTSTGSETSSVVGSGTDSATS--SSWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEV 962
Query: 437 XXXXXXXXXXISSKGPVVDLITDAAISTTAVVAKDASPSEGSEYVSADTSSSSAIVT 607
S+ ++ ++ S+ A + S + S SS+S++ T
Sbjct: 963 DPSTAASATGSSTSSIATASVSGSSTSSVATASATDSSTSSIAAASVTGSSTSSVAT 1019
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 500 TDAAISTTAVVAKDASPSEGSEYVSADTSSSSAI 601
TD+ STTA+ ++ S S S +S+ TS S++I
Sbjct: 862 TDSVTSTTALTSQGPSSSVVSSSLSSTTSLSTSI 895
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 467 ISSKGPVVDLITDAAISTTAVVAKDASPSEGSEYVSADTSSSSA 598
++ G + ++ +++S+T + +SPS S + SSSS+
Sbjct: 117 LTGNGVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSS 160
>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 25.4 bits (53), Expect = 6.6
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = -3
Query: 546 EASFATTAVVEIAASVIKSTTGPLLDISTVAPATLVDELVSVSTVAVLPSAVTETSAATD 367
EA V+E V++ T PL+ S A + +L + + P + T
Sbjct: 82 EACKLDARVIEAIGEVLRGTERPLITTSVTAVLSSNGKLGTEISEVPQPPIPRQLGEVTT 141
Query: 366 LTFL-EGVTSSFQRL 325
L F +GV +S RL
Sbjct: 142 LKFASQGVRASILRL 156
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 6.6
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = -3
Query: 615 DRIVTIADEDEVSAETYSLPSEGEAS--FATTAVVEIA-ASVIKSTTGPL-LDISTVAPA 448
DRI+ I EDE+ LPSE + F+ T ++ + I GPL +++ + P
Sbjct: 246 DRILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPT 305
Query: 447 TLVDEL 430
+ V+ L
Sbjct: 306 STVEGL 311
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 460 SRNIK*RPSRGFDHRCCNFNYSSSSKR 540
S +I + SR F H NFN+S+ +KR
Sbjct: 217 SADIPAKSSRLFPHGIYNFNFSAPNKR 243
>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 8.8
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 513 IAASVIKSTTGPLLDISTVA--PATLVDELVSVSTV 412
I SV + TG D VA P T+VD+LVS + +
Sbjct: 209 IGLSVAMTITGISSDDKVVAFTPPTIVDQLVSANVI 244
>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 252
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 98 YLVQAALNALTGFYAKPKSSEGWI-NDVIP 184
++V+ + LT FY + KS E W+ ND IP
Sbjct: 115 FIVKDLVPDLTYFYKQYKSIEPWLQNDNIP 144
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 32 DELNKITNPLINTVDQTVKEKTYLVQAALNALTGFYAKPKSSEGWINDVIP 184
D L + T P ++ + ++EK+YL A+ TG + S + +IP
Sbjct: 58 DFLRQETIPFVDKIFDVLREKSYLEGASNMPSTGMVTEEVSRYSPTSSMIP 108
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.0 bits (52), Expect = 8.8
Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = -3
Query: 603 TIADEDEVSA-ETYSLPSEGEASFATTAVVEIA--ASVIKSTTGPLLDISTVAPATLVDE 433
++A E+SA S +S A ++VV A ++ K + P + + + + +V
Sbjct: 203 SVASSSEISAGSATSYVPTSSSSIALSSVVASASVSAANKGVSTPAVSSAAASSSAVVSS 262
Query: 432 LVSVSTVAVLPSAVTETSAAT 370
+VS +T S ++ ++++
Sbjct: 263 VVSSATSVAASSTISSATSSS 283
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 8.8
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 470 SSKGPVVDLITDAAISTTAVVAKDASPSEGSEYVSADTSSSSAIVTI 610
++K VVD + A S+++ A S +E S S TSSS+ + +I
Sbjct: 328 TAKIVVVDYSEEMASSSSSASATATSSAESSIATSPITSSSNVVSSI 374
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.0 bits (52), Expect = 8.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 473 SKGPVVDLITDAAISTTAVVAKDASPSEGSEYVSADTSSSSA 598
+KG + L T+ +TT S S S SA +SSSS+
Sbjct: 281 TKGVMEALSTNDTTNTTDDATNTTSDSSSSSSASASSSSSSS 322
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,538
Number of Sequences: 5004
Number of extensions: 28686
Number of successful extensions: 139
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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