Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12b04
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0013 - 85732-86829                                               30   1.3  
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417...    30   1.7  
01_05_0086 - 18009957-18010107,18010428-18010557,18010700-180108...    29   3.0  
03_05_0954 - 29113938-29114024,29114277-29114444,29115156-291152...    29   3.9  
12_02_0385 + 18424617-18425594,18426811-18426850,18427581-184276...    28   5.2  
10_08_1049 - 22555738-22555744,22556157-22556286,22556613-225567...    28   6.8  
03_02_0350 - 7734494-7734952,7735765-7736133                           27   9.0  

>05_01_0013 - 85732-86829
          Length = 365

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +2

Query: 494 LITDAAISTTAVVAKDASPSEGSEYVSADTSSSSA 598
           +++ +++   +    DA+P+EG  YVSA +SSSS+
Sbjct: 158 VVSSSSLHFLSRAPADAAPNEGRMYVSASSSSSSS 192


>03_05_0520 +
           25139314-25139364,25139580-25139711,25141594-25141731,
           25143191-25143241,25143662-25143751,25143854-25144000,
           25144108-25144218,25144307-25144375,25144777-25145517,
           25145840-25146004,25146376-25146442,25146580-25146704,
           25148714-25148983,25149065-25149199,25149316-25149497,
           25149669-25149744
          Length = 849

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/54 (37%), Positives = 32/54 (59%)
 Frame = -3

Query: 522 VVEIAASVIKSTTGPLLDISTVAPATLVDELVSVSTVAVLPSAVTETSAATDLT 361
           V E+ +++       L D+ ++AP++LV  + SVST AVL    T++S AT  T
Sbjct: 212 VEELYSTLPMEKVEALEDMVSLAPSSLVKGVASVSTTAVLS---TKSSVATSPT 262


>01_05_0086 -
           18009957-18010107,18010428-18010557,18010700-18010877,
           18011032-18011141,18011217-18011332,18011449-18011710,
           18012345-18012660,18012685-18012927
          Length = 501

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 417 TVAVLPSAVTETSAATDLTFLEGVTSSFQRLTVLVS 310
           T+++LP  +T   A + ++F EGV SS     V+++
Sbjct: 387 TISILPRCITVALALSIVSFFEGVNSSLTAAVVVLT 422


>03_05_0954 -
           29113938-29114024,29114277-29114444,29115156-29115212,
           29115314-29115369,29115463-29115572,29116142-29116310,
           29116418-29116742,29117378-29117442,29117541-29117712,
           29118191-29118484
          Length = 500

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 473 SKGPVVDLITDAAISTTAVVAKDASPSEGSEYVSADTSSSSAIVT 607
           +K P    +  A + TT    K A P EG   V  + SS  A+ T
Sbjct: 241 AKAPPPPALPSAPLFTTEKSPKSAQPKEGMSAVFQEISSGKAVTT 285


>12_02_0385 +
           18424617-18425594,18426811-18426850,18427581-18427636,
           18428032-18428151
          Length = 397

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 141 QSPNLLKAGLMTSSP*RLTQHHHH 212
           +S +LL+ GL TSS  +L  HHHH
Sbjct: 75  ESASLLRRGLPTSS--KLPHHHHH 96


>10_08_1049 -
           22555738-22555744,22556157-22556286,22556613-22556790,
           22556990-22557099,22557234-22557349,22557707-22557968,
           22558097-22558406,22558450-22558500,22558545-22558628
          Length = 415

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = -3

Query: 516 EIAASVIKSTTGPLLDISTVAPATLVDELVSVSTVAVLPSAVTETSAATDLTFLEGVTSS 337
           EI  S+  ++T  L   ST     +V EL  + T+++LP  +T   A   ++  EGV +S
Sbjct: 319 EIFTSIAVASTFSLY--STAILGRVV-ELEPILTISILPRCITVALALRVVSLFEGVNTS 375

Query: 336 FQRLTVLVS 310
                V+++
Sbjct: 376 VTAAVVVLT 384


>03_02_0350 - 7734494-7734952,7735765-7736133
          Length = 275

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 177 SSP*RLTQHHHHGMLQHQNLTHRSR 251
           +SP +  QHHHH    HQ   H+ R
Sbjct: 192 ASPLQQQQHHHHQHHHHQQQQHQLR 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,349,848
Number of Sequences: 37544
Number of extensions: 176573
Number of successful extensions: 692
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)