Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12b04
(617 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X79198-1|CAA55790.1| 1938|Homo sapiens host cell factor protein. 33 0.61
X58521-1|CAA41411.1| 522|Homo sapiens nucleoporin p62 protein. 33 0.61
BC101107-1|AAI01108.1| 522|Homo sapiens nucleoporin 62kDa protein. 33 0.61
BC101106-1|AAI01107.1| 522|Homo sapiens nucleoporin 62kDa protein. 33 0.61
BC101105-1|AAI01106.1| 522|Homo sapiens nucleoporin 62kDa protein. 33 0.61
BC095410-1|AAH95410.1| 522|Homo sapiens nucleoporin 62kDa protein. 33 0.61
BC003663-1|AAH03663.1| 522|Homo sapiens nucleoporin 62kDa protein. 33 0.61
CR541721-1|CAG46522.1| 522|Homo sapiens NUP62 protein. 33 1.1
BC101104-1|AAI01105.1| 522|Homo sapiens nucleoporin 62kDa protein. 33 1.1
BC050717-1|AAH50717.1| 522|Homo sapiens nucleoporin 62kDa protein. 33 1.1
BC014842-1|AAH14842.1| 522|Homo sapiens nucleoporin 62kDa protein. 33 1.1
>X79198-1|CAA55790.1| 1938|Homo sapiens host cell factor protein.
Length = 1938
Score = 33.5 bits (73), Expect = 0.61
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = -3
Query: 612 RIVTIADEDEVSAETYSLPSEGEASFATTAVVEIAASV-IKSTTGPLLDISTVAPATLVD 436
R+VT V +L +G T V S + G S P T +
Sbjct: 758 RLVTPVTVSAVKPAVTTLVVKGTTGVTTLGTVTGTVSTSLAGAGGHSTSASLATPITTLG 817
Query: 435 ELVSVSTVAVLPSAVTETSAATDLTFLEGVTS 340
+ ++S+ + P+A+T ++A T LT G+T+
Sbjct: 818 TIATLSSQVINPTAITVSAAQTTLTAAGGLTT 849
>X58521-1|CAA41411.1| 522|Homo sapiens nucleoporin p62 protein.
Length = 522
Score = 33.5 bits (73), Expect = 0.61
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = -3
Query: 606 VTIADEDEVSAETYSLPSEGEAS-----FATTAVVEIAASVIKSTTGPLLDISTVAPATL 442
VT A + +SL + G AS +T A + STTG L++ +APA +
Sbjct: 243 VTTAGAPTAGTQGFSLKAPGAASGTSTTTSTAATATATTTTSSSTTGFALNLKPLAPAGI 302
Query: 441 VDELVSVSTVAVLPSAVTETSAATDLTFLE 352
+ T P A +A++ +T+ +
Sbjct: 303 PSNTAAAVTAPPGPGAAAGAAASSAMTYAQ 332
>BC101107-1|AAI01108.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 33.5 bits (73), Expect = 0.61
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = -3
Query: 606 VTIADEDEVSAETYSLPSEGEAS-----FATTAVVEIAASVIKSTTGPLLDISTVAPATL 442
VT A + +SL + G AS +T A + STTG L++ +APA +
Sbjct: 243 VTTAGAPTAGTQGFSLKAPGAASGTSTTTSTAATATATTTTSSSTTGFALNLKPLAPAGI 302
Query: 441 VDELVSVSTVAVLPSAVTETSAATDLTFLE 352
+ T P A +A++ +T+ +
Sbjct: 303 PSNTAAAVTAPPGPGAAAGAAASSAMTYAQ 332
>BC101106-1|AAI01107.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 33.5 bits (73), Expect = 0.61
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = -3
Query: 606 VTIADEDEVSAETYSLPSEGEAS-----FATTAVVEIAASVIKSTTGPLLDISTVAPATL 442
VT A + +SL + G AS +T A + STTG L++ +APA +
Sbjct: 243 VTTAGAPTAGTQGFSLKAPGAASGTSTTTSTAATATATTTTSSSTTGFALNLKPLAPAGI 302
Query: 441 VDELVSVSTVAVLPSAVTETSAATDLTFLE 352
+ T P A +A++ +T+ +
Sbjct: 303 PSNTAAAVTAPPGPGAAAGAAASSAMTYAQ 332
>BC101105-1|AAI01106.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 33.5 bits (73), Expect = 0.61
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = -3
Query: 606 VTIADEDEVSAETYSLPSEGEAS-----FATTAVVEIAASVIKSTTGPLLDISTVAPATL 442
VT A + +SL + G AS +T A + STTG L++ +APA +
Sbjct: 243 VTTAGAPTAGTQGFSLKAPGAASGTSTTTSTAATATATTTTSSSTTGFALNLKPLAPAGI 302
Query: 441 VDELVSVSTVAVLPSAVTETSAATDLTFLE 352
+ T P A +A++ +T+ +
Sbjct: 303 PSNTAAAVTAPPGPGAAAGAAASSAMTYAQ 332
>BC095410-1|AAH95410.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 33.5 bits (73), Expect = 0.61
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = -3
Query: 606 VTIADEDEVSAETYSLPSEGEAS-----FATTAVVEIAASVIKSTTGPLLDISTVAPATL 442
VT A + +SL + G AS +T A + STTG L++ +APA +
Sbjct: 243 VTTAGAPTAGTQGFSLKAPGAASGTSTTTSTAATATATTTTSSSTTGFALNLKPLAPAGI 302
Query: 441 VDELVSVSTVAVLPSAVTETSAATDLTFLE 352
+ T P A +A++ +T+ +
Sbjct: 303 PSNTAAAVTAPPGPGAAAGAAASSAMTYAQ 332
>BC003663-1|AAH03663.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 33.5 bits (73), Expect = 0.61
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = -3
Query: 606 VTIADEDEVSAETYSLPSEGEAS-----FATTAVVEIAASVIKSTTGPLLDISTVAPATL 442
VT A + +SL + G AS +T A + STTG L++ +APA +
Sbjct: 243 VTTAGAPTAGTQGFSLKAPGAASGTSTTTSTAATATATTTTSSSTTGFALNLKPLAPAGI 302
Query: 441 VDELVSVSTVAVLPSAVTETSAATDLTFLE 352
+ T P A +A++ +T+ +
Sbjct: 303 PSNTAAAVTAPPGPGAAAGAAASSAMTYAQ 332
>CR541721-1|CAG46522.1| 522|Homo sapiens NUP62 protein.
Length = 522
Score = 32.7 bits (71), Expect = 1.1
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = -3
Query: 606 VTIADEDEVSAETYSLPSEGEASFATTAVVEIAASVI-----KSTTGPLLDISTVAPATL 442
VT A + +SL + G AS +T A + STTG L++ +APA +
Sbjct: 243 VTTAGAPTAGTQGFSLKAPGAASGTSTTTSTAATATATTTSSSSTTGFALNLKPLAPAGI 302
Query: 441 VDELVSVSTVAVLPSAVTETSAATDLTFLE 352
+ T P A +A++ +T+ +
Sbjct: 303 PSNTAAAVTAPPGPGAAAGAAASSAMTYAQ 332
>BC101104-1|AAI01105.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 32.7 bits (71), Expect = 1.1
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = -3
Query: 606 VTIADEDEVSAETYSLPSEGEASFATTAVVEIAASVI-----KSTTGPLLDISTVAPATL 442
VT A + +SL + G AS +T A + STTG L++ +APA +
Sbjct: 243 VTTAGAPTAGTQGFSLKAPGAASGTSTTTSTAATATATTTSSSSTTGFALNLKPLAPAGI 302
Query: 441 VDELVSVSTVAVLPSAVTETSAATDLTFLE 352
+ T P A +A++ +T+ +
Sbjct: 303 PSNTAAAVTAPPGPGAAAGAAASSAMTYAQ 332
>BC050717-1|AAH50717.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 32.7 bits (71), Expect = 1.1
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = -3
Query: 606 VTIADEDEVSAETYSLPSEGEASFATTAVVEIAASVI-----KSTTGPLLDISTVAPATL 442
VT A + +SL + G AS +T A + STTG L++ +APA +
Sbjct: 243 VTTAGAPTAGTQGFSLKAPGAASGTSTTTSTAATATATTTSSSSTTGFALNLKPLAPAGI 302
Query: 441 VDELVSVSTVAVLPSAVTETSAATDLTFLE 352
+ T P A +A++ +T+ +
Sbjct: 303 PSNTAAAVTAPPGPGAAAGAAASSAMTYAQ 332
>BC014842-1|AAH14842.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 32.7 bits (71), Expect = 1.1
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = -3
Query: 606 VTIADEDEVSAETYSLPSEGEASFATTAVVEIAASVI-----KSTTGPLLDISTVAPATL 442
VT A + +SL + G AS +T A + STTG L++ +APA +
Sbjct: 243 VTTAGAPTAGTQGFSLKAPGAASGTSTTTSTAATATATTTSSSSTTGFALNLKPLAPAGI 302
Query: 441 VDELVSVSTVAVLPSAVTETSAATDLTFLE 352
+ T P A +A++ +T+ +
Sbjct: 303 PSNTAAAVTAPPGPGAAAGAAASSAMTYAQ 332
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,284,919
Number of Sequences: 237096
Number of extensions: 942416
Number of successful extensions: 2332
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2324
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -