Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12b03
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   0.92 
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    28   0.92 
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    27   2.8  
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr...    26   3.7  

>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 374 NLKKILEGVVD-YHQDILNLSLQEFPRPDVVNIAETADPSDLRRLLQLVLS 523
           N++   E +++ +  +I  LSLQ+F    +     TA PS   ++LQ  LS
Sbjct: 668 NIQPYTERIIEKFFGNICKLSLQKFSSNAIEQCIRTASPSTREQMLQEFLS 718


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +2

Query: 383 KILEGVVDYHQDILNLSLQEFPRPDVVNIAE 475
           ++L+  + ++ D++NLS +E   PD+ N+AE
Sbjct: 300 RVLKNEISFN-DLVNLSSEEMANPDLKNLAE 329


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 344 VGNNWRLKVSNLKKILEGVVDYHQDILNL 430
           VG +WR KV   + IL+G++  H   L L
Sbjct: 372 VGTSWRWKVDPPEMILQGILKAHYAKLKL 400


>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 392 EGVVDYHQDILNLSLQEFPRPDVVNIAETADPSD 493
           +GV D     +N S  E P P  +N+    D +D
Sbjct: 211 DGVTDNDSSNVNSSTNESPNPTDINVCSNDDATD 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,810
Number of Sequences: 5004
Number of extensions: 50171
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)