Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12b03
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539...    31   0.94 
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969...    28   6.6  
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72...    27   8.7  
01_04_0009 + 15052324-15052439,15052544-15052844                       27   8.7  

>03_06_0140 +
           31951569-31951710,31951943-31952037,31952141-31953982,
           31954065-31954179,31954260-31954897
          Length = 943

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = +2

Query: 404 DYHQDILNLSLQEFPRPDVVNIAETADPSDLRRLLQLVLSC 526
           ++HQ++  +  +E P  D+ +  ET++P+DL+     V+SC
Sbjct: 715 EHHQNLQLVEFKEKPLDDLGDAKETSNPTDLQDQKMHVVSC 755


>04_03_0732 +
           19095320-19095827,19095848-19096621,19096863-19096906,
           19097191-19097250
          Length = 461

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 326 TKIKTDVGNNWRLKVSNLKKILEGVVDYHQDILNL 430
           TKIK D  + W + V+   K LEG+  + Q+  +L
Sbjct: 375 TKIKDDDPDGWIIAVNTESKRLEGISPFSQESYHL 409


>06_01_0090 -
           724296-724532,724756-724938,725038-725088,725520-725639,
           725738-725840,726106-726264,726728-726846,726891-727004,
           727119-727277,727404-727451,728464-728640,729064-729116,
           729549-729661,729793-729873,729966-730081,730786-730905,
           732321-732429,732593-732770,732852-732920,733102-733233,
           733657-733766,733843-734003,734081-734171,734258-734355,
           734499-734619,734732-734892,734985-735090,735142-735236,
           735828-735852,736008-736084,736196-736282,736372-736421,
           736558-736639,736735-736795,737064-737116,737206-737395,
           737472-737595,737860-737962,738064-738156,740344-740422,
           740508-740584,740915-741043,742614-742731,742816-742913,
           743457-743546,744998-745123,745238-745351,745488-745611,
           745865-746019,746104-746201,746357-746600
          Length = 1926

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 230 AKHGNPMELSDG-VAIAEALTQIAPEYFTPSWNTKIKT 340
           AK  +P+ +S+G VA    +T++    F+P WN  IK+
Sbjct: 784 AKTLSPLRISNGPVAQGPEITKMHASIFSPFWNDIIKS 821


>01_04_0009 + 15052324-15052439,15052544-15052844
          Length = 138

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +2

Query: 215 TLNLKAKHGNPMELSDGVAIAEALTQIAPEYFTPSWNTKIKTDVGNNWRLKVSNLKKILE 394
           T N  +K  N +E+ D VA+         +Y    W    +  VGN W+ K S  +K+L 
Sbjct: 75  TPNTNSKDTNVIEIDDDVAVGNKRKL---KYAI--WQEFGQVKVGNVWKAKCSWCQKLLS 129

Query: 395 G 397
           G
Sbjct: 130 G 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,793,601
Number of Sequences: 37544
Number of extensions: 288663
Number of successful extensions: 635
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)