Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12b03
(605 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81493-7|CAE46664.1| 342|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z81493-6|CAB04038.1| 335|Caenorhabditis elegans Hypothetical pr... 31 0.84
U29380-18|ABB88224.1| 733|Caenorhabditis elegans Zygote defecti... 29 3.4
U29380-17|AAA68733.3| 736|Caenorhabditis elegans Zygote defecti... 29 3.4
U29380-16|AAS60254.1| 761|Caenorhabditis elegans Zygote defecti... 29 3.4
U29380-15|AAS60253.1| 777|Caenorhabditis elegans Zygote defecti... 29 3.4
AY487140-1|AAR32790.1| 733|Caenorhabditis elegans centrosome at... 29 3.4
AC025716-22|AAK39613.1| 630|Caenorhabditis elegans Zwilch (dros... 28 4.5
Z81089-4|CAB03138.3| 425|Caenorhabditis elegans Hypothetical pr... 28 5.9
U10414-10|AAA19077.1| 176|Caenorhabditis elegans Hypothetical p... 28 5.9
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 27 7.9
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 27 7.9
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 27 7.9
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 27 7.9
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 27 7.9
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 27 7.9
>Z81493-7|CAE46664.1| 342|Caenorhabditis elegans Hypothetical
protein F01D5.7b protein.
Length = 342
Score = 30.7 bits (66), Expect = 0.84
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = +2
Query: 341 DVGNNWRLKV-SNLKKILEGVVDYHQDILNLSLQEFPRPDV-VNIAETADPSDLRRLLQL 514
D G +R+++ S+ +K LE V D H + + L +++ P+V V T++ S L +
Sbjct: 49 DKGATYRIELKSDPEKDLESVRDCHDEPVQLVVRDRVHPEVKVFSVTTSEDSHL-----V 103
Query: 515 VLSCAVNCIKKEEYITRIMEMELSCQRS 598
+ C+ NC K + ++ L CQ S
Sbjct: 104 CVKCSPNCYSKNPEVAN--QVVLFCQSS 129
>Z81493-6|CAB04038.1| 335|Caenorhabditis elegans Hypothetical
protein F01D5.7a protein.
Length = 335
Score = 30.7 bits (66), Expect = 0.84
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = +2
Query: 341 DVGNNWRLKV-SNLKKILEGVVDYHQDILNLSLQEFPRPDV-VNIAETADPSDLRRLLQL 514
D G +R+++ S+ +K LE V D H + + L +++ P+V V T++ S L +
Sbjct: 49 DKGATYRIELKSDPEKDLESVRDCHDEPVQLVVRDRVHPEVKVFSVTTSEDSHL-----V 103
Query: 515 VLSCAVNCIKKEEYITRIMEMELSCQRS 598
+ C+ NC K + ++ L CQ S
Sbjct: 104 CVKCSPNCYSKNPEVAN--QVVLFCQSS 129
>U29380-18|ABB88224.1| 733|Caenorhabditis elegans Zygote defective:
embryonic lethalprotein 12, isoform d protein.
Length = 733
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +2
Query: 161 TMEGNGAVLCDNLINWLQTLNL-KAKHGNPMELSDGVAIAEALTQIAPEYFTPSWNTKIK 337
++E A L D + W++ L+ K +P L +G A +E L + +FT W +
Sbjct: 39 SLEDLQADLADMAV-WMEGLDATKLPLNDPQLLCNGRAFSEVLHNVDKNFFTDGWLETMP 97
Query: 338 TDVGNNWRLKVSNLKKILEGVVDY 409
+ N + S +K+ + DY
Sbjct: 98 ENRTTNIMVFRSCTRKLWRKMFDY 121
>U29380-17|AAA68733.3| 736|Caenorhabditis elegans Zygote defective:
embryonic lethalprotein 12, isoform a protein.
Length = 736
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +2
Query: 161 TMEGNGAVLCDNLINWLQTLNL-KAKHGNPMELSDGVAIAEALTQIAPEYFTPSWNTKIK 337
++E A L D + W++ L+ K +P L +G A +E L + +FT W +
Sbjct: 39 SLEDLQADLADMAV-WMEGLDATKLPLNDPQLLCNGRAFSEVLHNVDKNFFTDGWLETMP 97
Query: 338 TDVGNNWRLKVSNLKKILEGVVDY 409
+ N + S +K+ + DY
Sbjct: 98 ENRTTNIMVFRSCTRKLWRKMFDY 121
>U29380-16|AAS60254.1| 761|Caenorhabditis elegans Zygote defective:
embryonic lethalprotein 12, isoform c protein.
Length = 761
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +2
Query: 161 TMEGNGAVLCDNLINWLQTLNL-KAKHGNPMELSDGVAIAEALTQIAPEYFTPSWNTKIK 337
++E A L D + W++ L+ K +P L +G A +E L + +FT W +
Sbjct: 39 SLEDLQADLADMAV-WMEGLDATKLPLNDPQLLCNGRAFSEVLHNVDKNFFTDGWLETMP 97
Query: 338 TDVGNNWRLKVSNLKKILEGVVDY 409
+ N + S +K+ + DY
Sbjct: 98 ENRTTNIMVFRSCTRKLWRKMFDY 121
>U29380-15|AAS60253.1| 777|Caenorhabditis elegans Zygote defective:
embryonic lethalprotein 12, isoform b protein.
Length = 777
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +2
Query: 161 TMEGNGAVLCDNLINWLQTLNL-KAKHGNPMELSDGVAIAEALTQIAPEYFTPSWNTKIK 337
++E A L D + W++ L+ K +P L +G A +E L + +FT W +
Sbjct: 39 SLEDLQADLADMAV-WMEGLDATKLPLNDPQLLCNGRAFSEVLHNVDKNFFTDGWLETMP 97
Query: 338 TDVGNNWRLKVSNLKKILEGVVDY 409
+ N + S +K+ + DY
Sbjct: 98 ENRTTNIMVFRSCTRKLWRKMFDY 121
>AY487140-1|AAR32790.1| 733|Caenorhabditis elegans centrosome
attachment protein A protein.
Length = 733
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +2
Query: 161 TMEGNGAVLCDNLINWLQTLNL-KAKHGNPMELSDGVAIAEALTQIAPEYFTPSWNTKIK 337
++E A L D + W++ L+ K +P L +G A +E L + +FT W +
Sbjct: 39 SLEDLQADLADMAV-WMEGLDATKLPLNDPQLLCNGRAFSEVLHNVDKNFFTDGWLETMP 97
Query: 338 TDVGNNWRLKVSNLKKILEGVVDY 409
+ N + S +K+ + DY
Sbjct: 98 ENRTTNIMVFRSCTRKLWRKMFDY 121
>AC025716-22|AAK39613.1| 630|Caenorhabditis elegans Zwilch
(drosophila) homolog protein1 protein.
Length = 630
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 242 NPMELSDGVAIAEALTQIAPEYFTPSWNT 328
NP+ LSDGV++ + E+F+PS +T
Sbjct: 142 NPIPLSDGVSLQRYIRLNCSEHFSPSIST 170
>Z81089-4|CAB03138.3| 425|Caenorhabditis elegans Hypothetical
protein F53H4.5 protein.
Length = 425
Score = 27.9 bits (59), Expect = 5.9
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 293 IAPEYFTPSWNTKIKTDVGNNWRLKVSNLKKILE-GVVDYHQDILNLSLQEFPRPDVVNI 469
I+P+ FT N + D + R+ SNL+ ++E +D+H S + R +
Sbjct: 25 ISPKEFTVRANKDKQKDWKGSIRIGKSNLRTLMEMRSLDFHDHPNQCSAKCQSRNYITPK 84
Query: 470 AETADPSDLRR 502
T+DPS RR
Sbjct: 85 DPTSDPSGRRR 95
>U10414-10|AAA19077.1| 176|Caenorhabditis elegans Hypothetical
protein F42A10.6 protein.
Length = 176
Score = 27.9 bits (59), Expect = 5.9
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 15/122 (12%)
Frame = +2
Query: 188 CDNLINWLQTLNLKAKHGN---PMELSDGVAIAEALTQIAPEYFTPSWNTKIKTDVGN-- 352
C N + +N K GN P+ L++ + IA ++ + Y TP IK N
Sbjct: 34 CSNGPVMVTNVNPTDKSGNSEYPIRLTEPLLIATSINDPSSTYTTPGLKQTIKVWSWNMA 93
Query: 353 --NWRLK-----VSNLKKILEGV---VDYHQDILNLSLQEFPRPDVVNIAETADPSDLRR 502
W ++N+ GV ++ ++NL L P ++N+ + P L
Sbjct: 94 TCGWSSVPTFGLLNNIDACTNGVPCPIEPKNKVINLELDFSDTPAIINLLKNDKPYQLEY 153
Query: 503 LL 508
LL
Sbjct: 154 LL 155
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 399 TPSNIFFKLLTFSLQLFPTSVFIFVFHDGVKYSGA 295
TP F L F++ FP +VF VF V+ S +
Sbjct: 552 TPQITFVALALFNILRFPLAVFAMVFSQAVQCSAS 586
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 399 TPSNIFFKLLTFSLQLFPTSVFIFVFHDGVKYSGA 295
TP F L F++ FP +VF VF V+ S +
Sbjct: 552 TPQITFVALALFNILRFPLAVFAMVFSQAVQCSAS 586
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 399 TPSNIFFKLLTFSLQLFPTSVFIFVFHDGVKYSGA 295
TP F L F++ FP +VF VF V+ S +
Sbjct: 552 TPQITFVALALFNILRFPLAVFAMVFSQAVQCSAS 586
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 399 TPSNIFFKLLTFSLQLFPTSVFIFVFHDGVKYSGA 295
TP F L F++ FP +VF VF V+ S +
Sbjct: 552 TPQITFVALALFNILRFPLAVFAMVFSQAVQCSAS 586
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 399 TPSNIFFKLLTFSLQLFPTSVFIFVFHDGVKYSGA 295
TP F L F++ FP +VF VF V+ S +
Sbjct: 552 TPQITFVALALFNILRFPLAVFAMVFSQAVQCSAS 586
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 399 TPSNIFFKLLTFSLQLFPTSVFIFVFHDGVKYSGA 295
TP F L F++ FP +VF VF V+ S +
Sbjct: 552 TPQITFVALALFNILRFPLAVFAMVFSQAVQCSAS 586
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,477,230
Number of Sequences: 27780
Number of extensions: 278146
Number of successful extensions: 667
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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