Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12a24
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    99   6e-22
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ...    30   0.24 
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    26   4.0  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   5.2  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   6.9  

>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 98.7 bits (235), Expect = 6e-22
 Identities = 42/113 (37%), Positives = 68/113 (60%)
 Frame = +3

Query: 279 YWWLGILYAAWMLNDIDVCHKGGRTIQWVRNWGWWNYFRDYFPIKLVKTADLEPSKNYLF 458
           +W   I+Y  W++ D        R  +W+RN   + +F  YFPI+L KT +L+  KNY+F
Sbjct: 57  FWPFLIVYLIWLIYDDGFVTGKDRQKRWLRNAPPYRWFCHYFPIRLHKTTELDSEKNYIF 116

Query: 459 ACYPHGVLSSGAYCSFATNALNFHKLFPGLTPHLIVLGGHFLFPFFRDLILSL 617
             +PHG++S GA+  FA+   +F KLFPG+   ++ L  +F  P +RD +++L
Sbjct: 117 GYHPHGIISLGAFGGFASEGADFSKLFPGINVSVLTLNSNFYVPVYRDYLMAL 169


>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 201

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +1

Query: 181 GVYRPWPQPP--GCAWRCSGKARCCT 252
           GV+   P+PP  GC WRCS     CT
Sbjct: 51  GVFATMPRPPLEGCRWRCSIALPNCT 76


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 331 TSMSFSIQAAYSIPSHQ*SEYSNVRKRYSSV 239
           +S S+S     + PS+Q S Y N+ KR S++
Sbjct: 438 SSSSYSTAQISTFPSNQESIYKNINKRLSTL 468


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
 Frame = -1

Query: 385 FHQPQFLTHCIVRPPLWHTSMSFSI----QAAYSIPSHQ*SEYSNVRKRYSSVPCPNSAK 218
           F  P  LT     P   H++    +    Q  YS  S   +E  N  KR +  P  N  K
Sbjct: 26  FLSPNNLTEQTCSPLRAHSTFKEPVFLLSQRQYSHNSKILTELINSVKRPNK-PDQNEEK 84

Query: 217 HTQAVAARVCRRRDMGTLRGAHSIPTLRDIFLN 119
               +  +  +   +   +G H    L++IFLN
Sbjct: 85  SAVGIEEKSFKDEHLAQKKGLHHFADLKEIFLN 117


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 182 PRHGHVERSPFYPHTP*YFSKHVSRRFKHP 93
           P +  +E S  Y H   YF+ H+S+R K P
Sbjct: 563 PSNAVIEFSSIYLH---YFATHISKRSKKP 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,491
Number of Sequences: 5004
Number of extensions: 59607
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)