Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12a24
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1083 - 8859190-8859450,8859555-8859626 32 0.33
11_01_0739 - 6229029-6229856 30 1.8
08_02_0187 - 13978194-13979093,13980332-13980679 30 1.8
12_01_1045 - 10739396-10739402,10739968-10740239,10740361-107409... 29 3.1
04_04_1262 + 32200823-32201190,32201311-32201818,32201927-322020... 29 4.1
04_01_0294 + 3915821-3916166,3916380-3916849 29 4.1
11_03_0169 + 11102198-11102272,11103716-11103767,11104071-111041... 28 5.4
08_01_0955 + 9478018-9478773 28 5.4
02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,728... 28 5.4
12_02_0873 - 23892193-23892290,23892931-23893111 28 7.1
07_01_0151 - 1086632-1086672,1087112-1088177 28 7.1
02_05_1020 - 33561454-33561568,33561839-33562070,33563286-335633... 28 7.1
11_04_0344 - 16590803-16591433,16591598-16591914,16592300-165923... 27 9.4
11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,259... 27 9.4
04_04_1272 - 32288142-32288456,32288538-32288670,32288780-322890... 27 9.4
>06_01_1083 - 8859190-8859450,8859555-8859626
Length = 110
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Frame = +1
Query: 181 GVYRPWPQPPGCAWRCSG---KARCCTSSSHCC 270
G RPW P CA RCS K C T + CC
Sbjct: 45 GNLRPWECSPKCAGRCSNTQYKKACLTFCNKCC 77
>11_01_0739 - 6229029-6229856
Length = 275
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/82 (28%), Positives = 39/82 (47%)
Frame = +2
Query: 344 WSNNTVGQKLGLVELFPRLLPYQISQDSRFGTIQELPLRLLPSRSVVVGSVLFICHERSK 523
WS +TV L+++ ++ Y + T + + L LLP + VG +LFIC +
Sbjct: 197 WSMHTVM----LLDMLALMVAYAAGSVLDWETSKNVFLLLLPVH-IFVGGLLFICKQIQP 251
Query: 524 LPQVIPGLDASFDSARGTFPVP 589
PQ G +A ++ + P P
Sbjct: 252 SPQDEAGPNAGANTQEISNPTP 273
>08_02_0187 - 13978194-13979093,13980332-13980679
Length = 415
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -1
Query: 274 EYSNVRKRYSSVPCPNSAKHTQAVAARVCRRRDMGTLRGAH-SIPTLRDI 128
EYS K + + + V DMG L G H ++PTLR I
Sbjct: 37 EYSQFNKLLTETRLAGDINRRRTITVLVVANGDMGALSGGHYTLPTLRHI 86
>12_01_1045 -
10739396-10739402,10739968-10740239,10740361-10740941,
10741566-10742586
Length = 626
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +2
Query: 233 ARHAAVPLPHIAVL*LLVAWNT 298
A HAAV L H AVL LL+ WN+
Sbjct: 330 ALHAAVLLRHTAVLELLLKWNS 351
>04_04_1262 +
32200823-32201190,32201311-32201818,32201927-32202031,
32202222-32202287,32202471-32202536,32202698-32202751,
32202895-32203041
Length = 437
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 343 PLWHTSMSFSIQAAYSIPSHQ*SEYSNVRKRYSSVPCPNSAKHTQAV 203
P W+ S F + AA ++ + + ++VR S P P A T A+
Sbjct: 245 PFWNPSAGFGMPAAVAVAAAAAQDQASVRSAKRSSPAPPRAAATLAL 291
>04_01_0294 + 3915821-3916166,3916380-3916849
Length = 271
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 155 GSSQRAHVAASTDPGRNRLGVLGAVRARHAAVPLPHIA 268
G R H+A D G ++LG +G + + A V P IA
Sbjct: 111 GEELRGHLALRKDAGEDKLGQVGLLDKKLAKVARPTIA 148
>11_03_0169 +
11102198-11102272,11103716-11103767,11104071-11104185,
11104258-11104328,11105077-11105164,11105251-11105369,
11106276-11106278,11106327-11106397
Length = 197
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 24 NVRSCARVFIISESTCMK*IIVIGMLETA---ADMFRKISRSVGIEWAPLNVPMSRRLQT 194
NV + +FI T ++ + +GM+ A++ +K S+G+E+AP++ R L
Sbjct: 122 NVDPASCIFIDDRMTNIEAALSVGMVGLQFKNAEVLKKDLCSLGVEFAPVHEDAMRDLVK 181
Query: 195 LAATAWVCLA 224
L A A + L+
Sbjct: 182 LIAIATIKLS 191
>08_01_0955 + 9478018-9478773
Length = 251
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +1
Query: 163 STCPCRGVYRPWPQPPGCAWRCSGKARCCTSSSHC 267
+T PC G PP AW C+ A C S C
Sbjct: 85 ATAPCAGAGSTTTAPPA-AWTCTRAAPRCRCPSRC 118
>02_02_0157 -
7280335-7280541,7280656-7280762,7280918-7281097,
7281182-7281277,7281378-7281459,7281553-7283037,
7283376-7283450,7283521-7283598,7283708-7283791,
7283885-7283965,7284073-7284291,7284398-7284648,
7284748-7284796
Length = 997
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 158 SSQRAHVAASTDPGRNRLGVLGAVRARHAAVPLP 259
S+ A AAS DP R R V+G + A +PLP
Sbjct: 4 SNNAAAAAASPDPSRRREDVVGWLLALFPDLPLP 37
>12_02_0873 - 23892193-23892290,23892931-23893111
Length = 92
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 247 SSVPCPNSAKHTQAVAARVCRRRDMGTLRGAHSI 146
S+ P P S++ A + RR+D G LRGA+ I
Sbjct: 31 SADPAPPSSRMDPARVKTMGRRQDGGNLRGAYGI 64
>07_01_0151 - 1086632-1086672,1087112-1088177
Length = 368
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 172 PCRGVYRPWPQPPGCAWRCSGKARCCT 252
P G +R +PQPP + C+G C T
Sbjct: 128 PTTGDHRIFPQPPYLDFYCTGAVLCAT 154
>02_05_1020 -
33561454-33561568,33561839-33562070,33563286-33563374,
33563856-33563944
Length = 174
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -3
Query: 212 PGGCGQGL*TPRHGHVERSPFYPHTP*YFSKHVSRRFKHPNNNNLFHTR 66
PGG G G R RSP Y +P Y + S R + P ++ R
Sbjct: 107 PGGLGSGKRRSRSRSRSRSPQYRKSPTYGRRSYSPRDRSPRRRSVSPVR 155
>11_04_0344 -
16590803-16591433,16591598-16591914,16592300-16592395,
16592505-16592540
Length = 359
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 238 PCPNSAKHTQAVAARVCRRRDMGTLRGAHSIPTLRDIFLNMSAAVS 101
P P++++ V +VCRR + A +I TLR + L S ++
Sbjct: 31 PLPSTSRPNSMVIKKVCRREFIPPHIVAEAISTLRGLDLRWSGPIT 76
>11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,
2590301-2590606,2590698-2590912,2591461-2591755,
2591901-2592065,2592142-2592738,2593029-2593115,
2593203-2593523,2594047-2596071
Length = 1477
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 36 CARVFIISESTCMK*IIVIGMLETAADMFRKISRSV 143
C+ +F+IS S C I+V+GM +T+ +F ++ S+
Sbjct: 960 CSMIFLISRSLC---IVVLGM-QTSRSLFSQLLNSL 991
>04_04_1272 -
32288142-32288456,32288538-32288670,32288780-32289020,
32289124-32289340,32289557-32289681,32290873-32292157
Length = 771
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 574 PPSTIK*GVKPGNNLWKFRAFVANEQYAPDDNTP 473
P +T+ G+K G NLW + +PDD +P
Sbjct: 158 PSNTLLPGMKMGKNLWTGAEWDLTSWRSPDDPSP 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,538,001
Number of Sequences: 37544
Number of extensions: 433303
Number of successful extensions: 1334
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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