Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12a24
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64852-6|AAB04969.1| 359|Caenorhabditis elegans Hypothetical pr... 130 6e-31
AF003384-3|AAK71373.1| 349|Caenorhabditis elegans Hypothetical ... 108 4e-24
Z81557-5|CAB04533.1| 345|Caenorhabditis elegans Hypothetical pr... 107 5e-24
AF003384-4|AAO21379.1| 339|Caenorhabditis elegans Hypothetical ... 107 9e-24
AC006804-1|AAF60755.1| 340|Caenorhabditis elegans Hypothetical ... 104 5e-23
AC006637-1|AAK85476.2| 342|Caenorhabditis elegans Hypothetical ... 29 2.1
Z50872-4|CAA90757.2| 498|Caenorhabditis elegans Hypothetical pr... 29 3.7
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 28 4.9
AF043698-4|AAB97560.1| 275|Caenorhabditis elegans Hypothetical ... 28 6.4
AF043698-3|AAK68268.1| 268|Caenorhabditis elegans Hypothetical ... 28 6.4
Z70754-8|CAE17845.1| 188|Caenorhabditis elegans Hypothetical pr... 27 8.5
>U64852-6|AAB04969.1| 359|Caenorhabditis elegans Hypothetical
protein W01A11.2 protein.
Length = 359
Score = 130 bits (315), Expect = 6e-31
Identities = 62/169 (36%), Positives = 86/169 (50%), Gaps = 1/169 (0%)
Frame = +3
Query: 123 RKISRSVGIEWAPLNVPMSRRLQTLAATAWVCLAXXXXXXXXXXXXXXXXSDYWWLGI-L 299
++I SV APL VP RRL+TLA ++ + + WW + L
Sbjct: 17 KEICSSVSRILAPLLVPWKRRLETLAVMGFIFMWVILPIMDLWVPFHVLFNTRWWFLVPL 76
Query: 300 YAAWMLNDIDVCHKGGRTIQWVRNWGWWNYFRDYFPIKLVKTADLEPSKNYLFACYPHGV 479
YA W D D K R W R W YF YFP++L+KTADL +NY+ +PHG+
Sbjct: 77 YAVWFYYDFDTPKKASRRWNWARRHVAWKYFASYFPLRLIKTADLPADRNYIIGSHPHGM 136
Query: 480 LSSGAYCSFATNALNFHKLFPGLTPHLIVLGGHFLFPFFRDLILSLGNL 626
S G + + +TNA F FPG+ H++ L G F FPF R+ + LG +
Sbjct: 137 FSVGGFTAMSTNATGFEDKFPGIKSHIMTLNGQFYFPFRREFGIMLGGI 185
>AF003384-3|AAK71373.1| 349|Caenorhabditis elegans Hypothetical
protein K07B1.4a protein.
Length = 349
Score = 108 bits (259), Expect = 4e-24
Identities = 53/159 (33%), Positives = 80/159 (50%)
Frame = +3
Query: 126 KISRSVGIEWAPLNVPMSRRLQTLAATAWVCLAXXXXXXXXXXXXXXXXSDYWWLGILYA 305
K+ +G+EWAPLN+P++RRLQTL A + + + W L LY
Sbjct: 10 KMPHLLGVEWAPLNIPLARRLQTLGALHFFFITLFTPVLVLTVPFYMLYTVLWPLIFLYG 69
Query: 306 AWMLNDIDVCHKGGRTIQWVRNWGWWNYFRDYFPIKLVKTADLEPSKNYLFACYPHGVLS 485
WM+ D + KG W + +++ +YFP+KL T+D+ NYL +PHG++S
Sbjct: 70 LWMIYDWNSPKKGAYMSNWFQRQRIHSWYANYFPVKLHTTSDMPEEHNYLIGYHPHGIIS 129
Query: 486 SGAYCSFATNALNFHKLFPGLTPHLIVLGGHFLFPFFRD 602
A+ +FATN P + HL L G F P+ R+
Sbjct: 130 MAAFINFATNGTGILDTLPRIRFHLCTLVGQFWTPWRRE 168
>Z81557-5|CAB04533.1| 345|Caenorhabditis elegans Hypothetical
protein F59A1.10 protein.
Length = 345
Score = 107 bits (258), Expect = 5e-24
Identities = 53/158 (33%), Positives = 81/158 (51%)
Frame = +3
Query: 147 IEWAPLNVPMSRRLQTLAATAWVCLAXXXXXXXXXXXXXXXXSDYWWLGILYAAWMLNDI 326
I+W + P R+ A W L + W + LYA W L D
Sbjct: 13 IKWVNIFSPWDRQRAYFALVVWFGLIYPFCCLCQVAPFVLFFTGQWIILGLYAVWYLYDR 72
Query: 327 DVCHKGGRTIQWVRNWGWWNYFRDYFPIKLVKTADLEPSKNYLFACYPHGVLSSGAYCSF 506
+ +GG W RN +F +YFP+KL KTA+L+P++NYLF +PHG+L GA+ F
Sbjct: 73 ESPRRGGYRDNWFRNLSLHKWFAEYFPVKLHKTAELDPNQNYLFGYHPHGILGVGAWSCF 132
Query: 507 ATNALNFHKLFPGLTPHLIVLGGHFLFPFFRDLILSLG 620
+A N ++F G+ ++ L G+F F R+++LS+G
Sbjct: 133 GFDACNVKQVFKGIRFNICTLPGNFTAMFRREILLSIG 170
>AF003384-4|AAO21379.1| 339|Caenorhabditis elegans Hypothetical
protein K07B1.4b protein.
Length = 339
Score = 107 bits (256), Expect = 9e-24
Identities = 52/154 (33%), Positives = 78/154 (50%)
Frame = +3
Query: 141 VGIEWAPLNVPMSRRLQTLAATAWVCLAXXXXXXXXXXXXXXXXSDYWWLGILYAAWMLN 320
+G+EWAPLN+P++RRLQTL A + + + W L LY WM+
Sbjct: 5 LGVEWAPLNIPLARRLQTLGALHFFFITLFTPVLVLTVPFYMLYTVLWPLIFLYGLWMIY 64
Query: 321 DIDVCHKGGRTIQWVRNWGWWNYFRDYFPIKLVKTADLEPSKNYLFACYPHGVLSSGAYC 500
D + KG W + +++ +YFP+KL T+D+ NYL +PHG++S A+
Sbjct: 65 DWNSPKKGAYMSNWFQRQRIHSWYANYFPVKLHTTSDMPEEHNYLIGYHPHGIISMAAFI 124
Query: 501 SFATNALNFHKLFPGLTPHLIVLGGHFLFPFFRD 602
+FATN P + HL L G F P+ R+
Sbjct: 125 NFATNGTGILDTLPRIRFHLCTLVGQFWTPWRRE 158
>AC006804-1|AAF60755.1| 340|Caenorhabditis elegans Hypothetical
protein Y53G8B.2 protein.
Length = 340
Score = 104 bits (250), Expect = 5e-23
Identities = 54/160 (33%), Positives = 76/160 (47%)
Frame = +3
Query: 141 VGIEWAPLNVPMSRRLQTLAATAWVCLAXXXXXXXXXXXXXXXXSDYWWLGILYAAWMLN 320
+GIEW L + R+ L L + W + LYA W
Sbjct: 5 LGIEWVDLFSSIQRKKTYLGVVYHFMLTYPLALFVTILPFFLLFTFQWHILALYACWYFY 64
Query: 321 DIDVCHKGGRTIQWVRNWGWWNYFRDYFPIKLVKTADLEPSKNYLFACYPHGVLSSGAYC 500
D+D +GG + WVR W ++F YFPI L KTA+L KNYL +PHG++S A+
Sbjct: 65 DMDSPRRGGYSSDWVRKWRVNDWFAQYFPINLHKTAELSTDKNYLVGIHPHGIISMAAWS 124
Query: 501 SFATNALNFHKLFPGLTPHLIVLGGHFLFPFFRDLILSLG 620
+FATN ++ FPG+ +L L F R+L+L G
Sbjct: 125 NFATNGTGIYEKFPGIRWNLCTLALQFRMAIRRELLLLTG 164
>AC006637-1|AAK85476.2| 342|Caenorhabditis elegans Hypothetical
protein F41B4.1 protein.
Length = 342
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 540 GITCGSLERSWQMNNTLPTTTLREGSKRRGSSWM 439
G T G+L+ + +TLP T+ KR+G SW+
Sbjct: 267 GSTYGTLKGGMKHTSTLPPTSPYSSLKRKGVSWL 300
>Z50872-4|CAA90757.2| 498|Caenorhabditis elegans Hypothetical
protein C05D12.1 protein.
Length = 498
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 471 HGVLSSGAYCSFATNALNFHKLFPGLTPHLIVLGGHFLFPFFRDLIL 611
HG+L A+ A+NA+ + F L P +LG F RD+++
Sbjct: 245 HGILLMFAWWVLASNAILISRYFKPLFPRNKLLGTAVWFQLHRDMMI 291
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = +3
Query: 324 IDVCHKGGRTIQWVRNWGWWNYFRDYFPIKLVKTADLE 437
I + + G +RNW WW F P+ V D E
Sbjct: 815 IRIIQRNGLAYLKLRNWQWWRLFTKVKPLLQVTRTDDE 852
>AF043698-4|AAB97560.1| 275|Caenorhabditis elegans Hypothetical
protein C54G6.1a protein.
Length = 275
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 290 WNTVRCLDAKRH*RMPQGWSNNTVGQKLG 376
W+ +RC+D H RM Q W ++ KLG
Sbjct: 114 WDKIRCVDFGCHQRMRQAWC--SISLKLG 140
>AF043698-3|AAK68268.1| 268|Caenorhabditis elegans Hypothetical
protein C54G6.1b protein.
Length = 268
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 290 WNTVRCLDAKRH*RMPQGWSNNTVGQKLG 376
W+ +RC+D H RM Q W ++ KLG
Sbjct: 107 WDKIRCVDFGCHQRMRQAWC--SISLKLG 133
>Z70754-8|CAE17845.1| 188|Caenorhabditis elegans Hypothetical
protein F58E6.11 protein.
Length = 188
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -1
Query: 166 LRGAHSIPTLRDIFLNMSAAVSSIPITIIYFIH-VDSLIMNTRAHDRTF 23
LR + S+ + ++FL S SIP+ I+ +H SL+ + + H +F
Sbjct: 101 LRLSCSVVLVAELFLPHSDPTVSIPLIIVSIVHSAFSLLSSVQVHSLSF 149
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,811,216
Number of Sequences: 27780
Number of extensions: 342380
Number of successful extensions: 1040
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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