Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12a24
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    24   1.4  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   2.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.3  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   5.7  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   5.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.6  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 342 GGRTIQWVRNWGWWNY 389
           GGR +Q   +W W NY
Sbjct: 104 GGRLLQPYPDWSWANY 119


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 518 SKLPQVIPGLDASFDSARGTFPV 586
           S +PQ    L+ S+DS+ G  PV
Sbjct: 54  SSVPQPPRSLEGSYDSSSGDSPV 76


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 332 MPQGWSNNTVGQKLGLVELFPRLLPYQISQDSRFGTIQEL 451
           MP GW      Q L L +L     P+QI    + G I++L
Sbjct: 82  MPDGWETEISDQMLELRDLPISGKPFQIRM--KHGLIRDL 119


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +3

Query: 321 DIDVCHKGGRTIQWVRNWG-WWNY 389
           +I    +G   ++W+ NWG  W +
Sbjct: 272 EISNAFRGNNNLKWLVNWGEQWGF 295


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 523 TSTSYSRA*RLI**CSGDISCSRSSG 600
           T   Y    RL   CSGDIS ++  G
Sbjct: 46  TKDEYDEIGRLKRTCSGDISVTKCEG 71


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 523 TSTSYSRA*RLI**CSGDISCSRSSG 600
           T   Y    RL   CSGDIS ++  G
Sbjct: 46  TKDEYDEIGRLKRTCSGDISVTKCEG 71


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 401 VIAEIVPPAPISDPL 357
           ++AEI+PP  ++ PL
Sbjct: 284 LLAEIIPPTSLTVPL 298


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 362 GQKLGLVELFPRLLPYQISQDSRFGTIQELPLRLLPSRS 478
           G  +G    FP L P   +      TIQ L  ++ P R+
Sbjct: 383 GYPIGSGGSFPSLYPMATTSPQSQSTIQTLRPQVSPDRT 421


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 401 VIAEIVPPAPISDPL 357
           ++AEI+PP  ++ PL
Sbjct: 297 LLAEIIPPTSLAIPL 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,284
Number of Sequences: 438
Number of extensions: 4679
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)