Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12a21
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0588 + 22567820-22570802,22570917-22571269 33 0.17
03_02_0134 + 5820068-5820178,5822439-5822508,5822893-5822939,582... 33 0.17
06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397... 33 0.23
02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236 33 0.23
09_04_0744 - 19867604-19867686,19868075-19869872,19870777-198708... 31 0.70
06_03_1221 - 28514952-28518152 31 0.70
01_01_0359 + 2829325-2832076,2832223-2832593,2833335-2833695,283... 31 0.70
12_02_1224 + 27158810-27161366,27161593-27161969 31 0.93
04_01_0179 + 2021977-2024890,2025117-2025610 31 1.2
01_02_0093 - 11063514-11064755,11065364-11065483,11066459-11066785 31 1.2
09_02_0610 - 11206198-11206588,11206812-11207001,11207116-112071... 29 2.8
01_01_0361 + 2838979-2841745,2841897-2842285 29 3.7
12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045 29 4.9
02_05_0061 + 25506648-25509399,25509564-25509901,25510392-255105... 29 4.9
11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415 28 8.6
08_01_0914 + 9010613-9013316,9013537-9013748 28 8.6
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256... 28 8.6
01_01_0363 + 2850954-2853675,2853819-2854225 28 8.6
>06_03_0588 + 22567820-22570802,22570917-22571269
Length = 1111
Score = 33.5 bits (73), Expect = 0.17
Identities = 25/88 (28%), Positives = 44/88 (50%)
Frame = +2
Query: 419 LKDVTKLTFTKNNITMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQEITLR 598
L D+T+L + N+ IP+E + + + LDI ++E + S +QEI L
Sbjct: 100 LTDLTRLQLSNNSFRGS-IPSE-IGFLSKLSILDISMNSLEGNIPSELTSCSKLQEIDLS 157
Query: 599 GNQIKILEVNAFADHKDLAILGLDTNAI 682
N+++ +AF D +L L L +N +
Sbjct: 158 NNKLQGRIPSAFGDLTELQTLELASNKL 185
>03_02_0134 +
5820068-5820178,5822439-5822508,5822893-5822939,
5823067-5823175,5823355-5823440,5823768-5823858,
5824204-5824289,5824649-5824762
Length = 237
Score = 33.5 bits (73), Expect = 0.17
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = +2
Query: 446 TKNNITMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQEITLRGNQIKILEV 625
TK N + + +P E L+ S+ LD+ I ++ L +Q + L GN ++ +
Sbjct: 30 TKINASREVVPNEVLQVGNSLRILDLTNNKIAEI-PQEVGTLVNMQRLVLAGNLVESIPA 88
Query: 626 NAFADHKDLAILGLDTNAI 682
N ++L IL LD N I
Sbjct: 89 N-IGYLRNLKILTLDRNKI 106
>06_01_0558 -
3968211-3969475,3970198-3970266,3970374-3970529,
3971075-3971405
Length = 606
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/42 (33%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = +2
Query: 557 AFANLSAVQEITLRGNQIK-ILEVNAFADHKDLAILGLDTNA 679
+FAN++ +++++L NQ++ +L +N+F++H L L L +N+
Sbjct: 235 SFANMTLLEQLSLSHNQLEGLLLLNSFSNHLQLKYLRLSSNS 276
>02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236
Length = 1096
Score = 33.1 bits (72), Expect = 0.23
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = +2
Query: 452 NNITMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQEITLRGNQIKILEVNA 631
NN IP+E T S+++L + Y ++ + NL ++ + LRGNQ+
Sbjct: 207 NNSLAGSIPSEIGNLT-SLVSLILSYNHLTGSVPSSLGNLQRIKNLQLRGNQLSGPVPTF 265
Query: 632 FADHKDLAILGLDTN 676
+ L IL L TN
Sbjct: 266 LGNLSSLTILNLGTN 280
>09_04_0744 -
19867604-19867686,19868075-19869872,19870777-19870801,
19872313-19872710
Length = 767
Score = 31.5 bits (68), Expect = 0.70
Identities = 20/75 (26%), Positives = 41/75 (54%)
Frame = +2
Query: 461 TMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQEITLRGNQIKILEVNAFAD 640
++K++ K +L+L + YGN+ ++ + +L+ + ++ L G Q+K E+
Sbjct: 570 SLKFLAESEFAAPKHLLSLRL-YGNLVRLPKW-IGSLNDLAKLKLLGTQLKQGEIMHLGK 627
Query: 641 HKDLAILGLDTNAIV 685
++LA LGL N+ V
Sbjct: 628 LRNLAFLGLWDNSYV 642
>06_03_1221 - 28514952-28518152
Length = 1066
Score = 31.5 bits (68), Expect = 0.70
Identities = 24/82 (29%), Positives = 40/82 (48%)
Frame = +2
Query: 431 TKLTFTKNNITMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQEITLRGNQI 610
T L F+ N IT IP E +K K++ LD+ Y N+ ++L+ +Q + LR N++
Sbjct: 566 TTLNFSDNGITGA-IPPEIVKL-KTLQVLDVSYNNLSGGIPPELSSLTRLQIVNLRWNRL 623
Query: 611 KILEVNAFADHKDLAILGLDTN 676
A + LA+ + N
Sbjct: 624 TGTIPQALKELNFLAVFNVAYN 645
>01_01_0359 +
2829325-2832076,2832223-2832593,2833335-2833695,
2833799-2833868,2834021-2834108,2834325-2834580,
2834758-2834883,2835217-2835425
Length = 1410
Score = 31.5 bits (68), Expect = 0.70
Identities = 26/105 (24%), Positives = 43/105 (40%)
Frame = +2
Query: 365 LFAEHVKPEDDTWTAFDYLKDVTKLTFTKNNITMKYIPTEALKYTKSVLNLDIKYGNIEK 544
L A H E LK++ L + N + IP E L+ LD+ Y ++
Sbjct: 444 LLAFHTNLEGPIPATIGRLKNLFNLDLSFNRLNGS-IPREILELPSLAWILDLSYNSLSG 502
Query: 545 VGAYAFANLSAVQEITLRGNQIKILEVNAFADHKDLAILGLDTNA 679
L+ + ++ L GNQ+ N+ + + L L LD N+
Sbjct: 503 HLPSEVGTLANLNQLILSGNQLSGQIPNSIGNCEVLEFLLLDNNS 547
>12_02_1224 + 27158810-27161366,27161593-27161969
Length = 977
Score = 31.1 bits (67), Expect = 0.93
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Frame = +2
Query: 431 TKLT--FTKNNITMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQEITLRGN 604
T LT F NN +P E + +++ +D+ I A LS + +++L+GN
Sbjct: 442 TNLTSLFASNNRMSGVLPPE-IAGAATLVKIDLSNNQIGGAIPEAVGRLSRLNQLSLQGN 500
Query: 605 QIKILEVNAFADHKDLAILGLDTNAIVENKQRRVWSIYP 721
++ AD L +L L NA+ + ++ P
Sbjct: 501 RLNGSIPATLADLHSLNVLNLSYNALAGEIPEALCTLLP 539
>04_01_0179 + 2021977-2024890,2025117-2025610
Length = 1135
Score = 30.7 bits (66), Expect = 1.2
Identities = 27/88 (30%), Positives = 41/88 (46%)
Frame = +2
Query: 419 LKDVTKLTFTKNNITMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQEITLR 598
L + KL +N++T IP T S+++LD+ I + L A+Q++ L
Sbjct: 280 LPRLQKLLLWQNSLTGP-IPDTFGNLT-SLVSLDLSINAISGAIPASLGRLPALQDLMLS 337
Query: 599 GNQIKILEVNAFADHKDLAILGLDTNAI 682
N + A A+ L L LDTNAI
Sbjct: 338 DNNLTGTIPPALANATSLVQLQLDTNAI 365
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = +2
Query: 452 NNITMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQEITLRGNQIKILEVNA 631
NN +P E+L + + +D+ + + AF L A+ + L GN + A
Sbjct: 506 NNTLTGALP-ESLAGVRGLQEIDVSHNQLTGGVPDAFGRLEALSRLVLSGNSLSGAIPAA 564
Query: 632 FADHKDLAILGLDTNAI 682
++L +L L NA+
Sbjct: 565 LGKCRNLELLDLSDNAL 581
>01_02_0093 - 11063514-11064755,11065364-11065483,11066459-11066785
Length = 562
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 344 FKSADCFLFAEHVKPEDDTWTAFDYLKDVTKLTFTKNNITMKYIPTEALKY 496
F S C LF EH + D +A ++++++TKL K+ + + I LKY
Sbjct: 441 FDSKTCELFLEHYMGKGDMTSALNWVENMTKLPRKKSKLDQEKISC-FLKY 490
>09_02_0610 -
11206198-11206588,11206812-11207001,11207116-11207184,
11207546-11207672,11207809-11208128,11208196-11208353,
11208503-11208580,11209484-11209555,11209994-11210135,
11212580-11213064,11214362-11214947,11215093-11215177
Length = 900
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 497 TKSVLNLDIKYGNIEKVGAYAFANLSAVQEITLRGNQI 610
T +++LD+ N++ V + F L+A+ + L GNQ+
Sbjct: 427 TSRIISLDLSQSNLQGVVSINFTFLTALNYLNLSGNQL 464
>01_01_0361 + 2838979-2841745,2841897-2842285
Length = 1051
Score = 29.1 bits (62), Expect = 3.7
Identities = 25/105 (23%), Positives = 45/105 (42%)
Frame = +2
Query: 365 LFAEHVKPEDDTWTAFDYLKDVTKLTFTKNNITMKYIPTEALKYTKSVLNLDIKYGNIEK 544
L+A + E + LK + L + N + IP E L+ LD+ Y ++
Sbjct: 450 LYAYYTNLEGPIPASLGKLKTLFVLDLSTNRLNGS-IPKEILELPSLSWYLDLSYNSLSG 508
Query: 545 VGAYAFANLSAVQEITLRGNQIKILEVNAFADHKDLAILGLDTNA 679
A L+ + ++ L GNQ+ ++ + + L L LD N+
Sbjct: 509 PLPIEVATLANLNQLILSGNQLSGQIPDSIGNCQVLESLLLDKNS 553
>12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045
Length = 1294
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Frame = +2
Query: 482 EALKYTKSVLNLD-IKYGNIEKVGAYAFANLSAVQEI---TLRGNQ-IKILEVNAFADHK 646
E K + + N+D ++Y N K+G + L+++QE+ ++G + KI ++ + +
Sbjct: 691 EEPKQVRYLGNIDHLRYVNYGKIGEFPIGRLTSLQELHNYRIQGGKGNKISAISNLSTLR 750
Query: 647 DLAILGLD 670
+L +LGL+
Sbjct: 751 ELEVLGLE 758
>02_05_0061 +
25506648-25509399,25509564-25509901,25510392-25510593,
25510779-25510854,25512036-25512294
Length = 1208
Score = 28.7 bits (61), Expect = 4.9
Identities = 24/88 (27%), Positives = 38/88 (43%)
Frame = +2
Query: 428 VTKLTFTKNNITMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQEITLRGNQ 607
++ L F+ NN + IPT T + LDI Y +++ NL + + R NQ
Sbjct: 497 LSSLRFSFNNF-IGTIPTSLFNITTLSIYLDISYNHLDGSIPPEVGNLPNLVYLDARYNQ 555
Query: 608 IKILEVNAFADHKDLAILGLDTNAIVEN 691
+ F + L IL L N+ + N
Sbjct: 556 LSGEIPITFEKCQLLQILYLQNNSFIGN 583
>11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415
Length = 1490
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/69 (21%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +2
Query: 473 IPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQEITLRGNQI-KILEVNAFADHKD 649
IP+ + + S+L ++++ N+ + + NLS+++ ++ N++ ++ NAF
Sbjct: 227 IPSSLGQLSSSLLTMNLRQNNLSGMIPNSIWNLSSLRAFSVSENKLGGMIPTNAFKTLHL 286
Query: 650 LAILGLDTN 676
L ++ + TN
Sbjct: 287 LEVIDMGTN 295
>08_01_0914 + 9010613-9013316,9013537-9013748
Length = 971
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 560 FANLSAVQEITLRGNQIKILEVNAFADHKDLAILGLDTNAI 682
F+N SA++ + LRGN + H +L + L NA+
Sbjct: 295 FSNASALESLLLRGNNYHGIIPREIGIHGNLKVFSLGDNAL 335
>07_01_0353 +
2563807-2564496,2564595-2564660,2564853-2564918,
2565044-2565115,2565196-2565261,2565355-2565417,
2565505-2565570,2565963-2566062,2567403-2567504,
2567772-2567995,2568200-2568314,2568653-2568763,
2568873-2569088,2569426-2569624,2570690-2570790,
2570872-2570919,2571052-2571236,2571345-2571462,
2571572-2571699,2571981-2572107,2572529-2572647,
2572770-2572938,2573078-2573162,2573247-2573320,
2573449-2573568,2574068-2574251,2574343-2574464,
2574548-2574755,2574885-2574958,2575047-2575185,
2575275-2575456,2575852-2576007,2576153-2576284,
2576508-2576566,2576913-2576945,2577065-2577196,
2577303-2577479
Length = 1675
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 482 EALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQEITLRGNQIKIL 619
E ++ K V LD+ + + G N +Q++ L GNQI L
Sbjct: 265 EGIEILKGVKVLDLSFNEFKLPGFEPLENCKLLQQLYLAGNQITSL 310
>01_01_0363 + 2850954-2853675,2853819-2854225
Length = 1042
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +2
Query: 557 AFANLSAVQEITLRGNQIKILEVNAFADHKDLAILGLDTNAIVENKQRRVWSI 715
+ ANLS+++ + L N +K L ++ + +L +GLD N++ +W++
Sbjct: 176 SLANLSSLEFLKLDFNHLKGLIPSSLGNIPNLQKIGLDGNSLSGEFPPSIWNL 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,250,648
Number of Sequences: 37544
Number of extensions: 317070
Number of successful extensions: 725
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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