Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12a16
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   3.0  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   4.0  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    26   4.0  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   6.9  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    25   6.9  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    25   6.9  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   9.1  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   9.1  

>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 500 NSCISEGDVSFSCXKSSWYPV 438
           N+  SE DV F C ++S YPV
Sbjct: 156 NTQSSETDVMFDCMRTSQYPV 176


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 46   SIKMQETTVEDADKYKLDFELDKQICRCCLSTN 144
            S+K+ ET      K  LD  L +++C  CL  N
Sbjct: 1356 SLKLTETVKGGIQKKTLDTFLMEKLCSSCLKNN 1388


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -1

Query: 125 LHICLSNSKSNLYLSASSTVVSCILIEQIQN 33
           LH+ LSNS  N+ L  +S+VVS  +++  QN
Sbjct: 337 LHL-LSNSPDNIPLIQNSSVVSSKILQNPQN 366


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +1

Query: 337 PFPIDARDQELSEYAGPY--LERSSVL-TFNHSGIGRT 441
           P PI + D E S+YA     + R S +  FN S I  T
Sbjct: 24  PSPIPSTDYECSDYASTIASISRESTMRNFNRSNISST 61


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = -1

Query: 224 RPSDSDTSMDAKS*IYVLYLCTPSMRLFVLKQHLHICLSNSKSNLYLSASSTVVSCILIE 45
           R   +D  +++ S   V      +M  F   +  H C +     LY SASSTV  C   E
Sbjct: 128 REDGTDEDINSNSVNDVSLSSGETMLQFPEHEEQHEC-NREMEQLYESASSTVYPCSFWE 186

Query: 44  QIQNEI 27
             + +I
Sbjct: 187 DAERKI 192


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/45 (24%), Positives = 18/45 (40%)
 Frame = +1

Query: 109 DKQICRCCLSTNRRMEGVHKYNTYIYDLASIEVSESDGLPQWICW 243
           +K  CRC  +          Y  ++Y LA+ ++   D    W  W
Sbjct: 475 EKVGCRCDFANQDPENYEDSYRKFLYALATSQIETFDKTWGWFYW 519


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 94  LDFELDKQICRCCLSTNRRMEGVHKYNTYIYD 189
           +DF + + IC+  + T R  + +H+ N +I D
Sbjct: 199 IDFIVIESICKFSIETFRLTDRLHESNRHIND 230


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 18/71 (25%), Positives = 36/71 (50%)
 Frame = +1

Query: 103 ELDKQICRCCLSTNRRMEGVHKYNTYIYDLASIEVSESDGLPQWICWECITLLSKSVKFK 282
           ELD  +    L  N    G    + ++Y+ ++ +++ES   P+ +  + I+L+SKS   +
Sbjct: 14  ELDSPVTTIALYNNHLYFGTEGGDVFLYNFSNFQLNES---PELV--KKISLVSKSRVNR 68

Query: 283 SKILKAHGALF 315
              +   GA+F
Sbjct: 69  ILAMPFLGAVF 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,186,580
Number of Sequences: 5004
Number of extensions: 45410
Number of successful extensions: 103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)