Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12a16
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0441 - 8517501-8517701,8518004-8518139,8519995-8520107,852...    29   1.7  
10_08_0753 + 20324011-20324113,20324210-20324231,20324344-203244...    29   2.3  
04_04_0638 - 26877640-26877825,26877954-26878160,26878866-268789...    29   2.3  
02_05_0665 - 30720842-30721003,30721290-30721448,30721555-307216...    28   4.0  

>03_02_0441 -
           8517501-8517701,8518004-8518139,8519995-8520107,
           8520189-8520284,8520376-8520590,8520675-8520797,
           8520887-8520917,8521020-8521079,8521951-8522106,
           8522185-8522274,8522347-8522562,8522671-8522805,
           8522898-8523401,8523485-8523700,8524411-8524456,
           8524542-8524678,8525059-8525191,8526084-8526358
          Length = 960

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +1

Query: 196 SIEVSESDGLPQWICWECITLLSKSVKFKSKILKAHGALFEYLSRCAPFPIDARDQE 366
           S+EV  +  L   I  + I ++S  VKFK+  LK H  +   L    P   +  D++
Sbjct: 253 SLEVCSNQELEINIRQQAIQIISWLVKFKASFLKKHKLVIPILQVMCPLLTETADED 309


>10_08_0753 +
           20324011-20324113,20324210-20324231,20324344-20324400,
           20324704-20324785,20324903-20324998,20325265-20325389,
           20325484-20325502,20325598-20325744
          Length = 216

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 184 KYTCCTYVHLPCACLCSNSICISVCL 107
           +Y CC   ++PC+  C  S C  VCL
Sbjct: 61  RYVCCAG-YMPCSGRCGESNCPEVCL 85


>04_04_0638 -
           26877640-26877825,26877954-26878160,26878866-26878925,
           26879229-26879435,26879501-26879549,26880138-26880337,
           26880425-26880510,26880585-26880741,26880920-26881084,
           26881817-26882053
          Length = 517

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 174 HVYLRFSIHRGIGVRRSPSVDLLGVHNFIKQISKVQI*NTQS 299
           H+++ +S H G GV   P++  L   +FIK + K    N+ S
Sbjct: 172 HIFIYYSDHGGPGVLGMPNLPYLYAGDFIKVLQKKHASNSYS 213


>02_05_0665 -
           30720842-30721003,30721290-30721448,30721555-30721687,
           30722042-30722227,30722377-30722906
          Length = 389

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 235 STEGDRLTPIPLWMLNRKYTCCTYVHLPCA 146
           STE   +TP+ LW++     C  +V L C+
Sbjct: 104 STEESPVTPLRLWLVGYALQCLVHVGLVCS 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,426,674
Number of Sequences: 37544
Number of extensions: 269340
Number of successful extensions: 599
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)