Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12a16
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81044-6|CAB02806.1|  360|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF014940-4|AAB63936.2|  322|Caenorhabditis elegans Hypothetical ...    28   3.6  
AC006730-1|AAK72090.1|  324|Caenorhabditis elegans Serpentine re...    28   4.7  
Z82262-2|CAB05152.1|  248|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL117204-43|CAB55131.2|  917|Caenorhabditis elegans Hypothetical...    27   8.2  

>Z81044-6|CAB02806.1|  360|Caenorhabditis elegans Hypothetical
           protein C30H6.2 protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 182 IYVLYLCTPSMRLFVLKQHLHICLSNSKSNLYLSASST 69
           IY+LY       +F  K HLH C  ++KS +  S+ ST
Sbjct: 132 IYILYFV--EFFMFYRKTHLHYCSPSTKSPVITSSVST 167


>AF014940-4|AAB63936.2|  322|Caenorhabditis elegans Hypothetical
           protein W02D7.6 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
 Frame = +1

Query: 145 RRMEGVHKYNTYIYD-----LASIEVSESDGLPQWICWECITLLSKSVKFKSKILKAHGA 309
           R +E  HK N+   D     LAS    E  G+  W C  C T +   +  +  I + H  
Sbjct: 22  RHLESKHKANSTHIDEFRRRLASSRAHELRGIRAWTCGLCGTTIPSKLGLERHIYRRH-- 79

Query: 310 LFEYLSR 330
             EY +R
Sbjct: 80  RMEYATR 86


>AC006730-1|AAK72090.1|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein33 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -3

Query: 390 VRSSIL-TQFLITCINWKRCASAQVLKKRTMS 298
           + S+I+  QFLI C+ +K  A AQVL K  +S
Sbjct: 98  ISSAIVEAQFLIGCVVFKHQAIAQVLNKHVVS 129


>Z82262-2|CAB05152.1|  248|Caenorhabditis elegans Hypothetical
           protein C43F9.5 protein.
          Length = 248

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -2

Query: 187 RKYTCCTYVHLPCACLCSNSICISVCLIQNPIYIYLHPL 71
           RK     Y +  C    +NS+C++ C   NP+     P+
Sbjct: 67  RKIGVGCYYNYQCTPYAANSVCLNNCCCTNPVVTTRAPI 105


>AL117204-43|CAB55131.2|  917|Caenorhabditis elegans Hypothetical
           protein Y116A8C.26a protein.
          Length = 917

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 88  YKLDFELDKQICRCCLSTNRRMEGVHKYNTYIYDLASI 201
           +  + E++K +CR  LST       H  N Y++DL  I
Sbjct: 201 FDFELEMEKSLCRDLLSTT-----PHYENAYLHDLVDI 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,962,289
Number of Sequences: 27780
Number of extensions: 250869
Number of successful extensions: 559
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)