Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12a11
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.7  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   8.3  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   8.3  

>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 247 YETNRKMWLLGFFKRVHRILIILLGVYFITSHLTHSIINFI 125
           Y  ++  W +GF  +V  I I  L VYF  +   H+ ++F+
Sbjct: 235 YFADQYTWRIGFLIQVPLIAIAFLCVYFTLNLPHHNHVSFM 275


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +2

Query: 206 FEEPKKPHFPVCFILTAL 259
           +E+ KKP + VCF+++ +
Sbjct: 377 YEQLKKPRYTVCFVVSCI 394


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 574 WQIIGTVDLLRGVRGSPRSRK*SSILEEK*HLLYDFFAGTRV 449
           +++IG +D +  +R SP  R   S   +K  +L+D F G ++
Sbjct: 249 FRLIGHIDTVAYIRWSPDDRYLLSCSCDKSVILWDAFTGEKL 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,889
Number of Sequences: 5004
Number of extensions: 41244
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)