Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12a11
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457740-8|CAM36338.1|  362|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z69885-5|CAA93756.2|  882|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AY064464-1|AAL40874.1|  882|Caenorhabditis elegans minibrain kin...    27   10.0 

>CU457740-8|CAM36338.1|  362|Caenorhabditis elegans Hypothetical
           protein C50E10.8 protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 247 YETNRKMWLLGFFKRVHRILIILLGVYFITSHLTHSI 137
           YE  R+ +LL       +ILI LLG YF+  +L H I
Sbjct: 159 YENTRRTYLLALLILFQQILIFLLG-YFLFFNLIHFI 194


>Z69885-5|CAA93756.2|  882|Caenorhabditis elegans Hypothetical
           protein T04C10.1 protein.
          Length = 882

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 236 PENVASWVLQTSPSYFNHFTGSLFHNIPSHSFHN 135
           P+N+ SW  Q S SY N    S   N+P  + +N
Sbjct: 7   PDNLQSWGQQPSSSYSNTQQHSQMTNLPPINHNN 40


>AY064464-1|AAL40874.1|  882|Caenorhabditis elegans minibrain kinase
           protein.
          Length = 882

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 236 PENVASWVLQTSPSYFNHFTGSLFHNIPSHSFHN 135
           P+N+ SW  Q S SY N    S   N+P  + +N
Sbjct: 7   PDNLQSWGQQPSSSYSNTQQHSQMTNLPPINHNN 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,031,110
Number of Sequences: 27780
Number of extensions: 218030
Number of successful extensions: 497
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)