Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12a11
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   1.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   1.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   1.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   5.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.0  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 230 FPVCFILTALMYFQRY 277
           FPVCF+   LMY+  Y
Sbjct: 412 FPVCFVCFNLMYWIIY 427


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 230 FPVCFILTALMYFQRY 277
           FPVCF+   LMY+  Y
Sbjct: 412 FPVCFVCFNLMYWIIY 427


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 230 FPVCFILTALMYFQRY 277
           FPVCF+   LMY+  Y
Sbjct: 350 FPVCFVCFNLMYWIIY 365


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 192 IRWTRLKNPRSHIF 233
           IR+TR +NP+++ F
Sbjct: 406 IRYTRCENPKTNFF 419


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 212 LQTSPSYFNHFTGS 171
           L T+P Y NH  GS
Sbjct: 80  LPTTPEYNNHLYGS 93


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -2

Query: 351 ELYYVANLFFYYYLSFNICVLLTV*YL*KYISAV 250
           E  Y+A +    YLS  + + LT+ Y+  +++ +
Sbjct: 22  EAEYLAKVLGPKYLSMRMVIPLTIIYMIIFVTGI 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,658
Number of Sequences: 438
Number of extensions: 2664
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)