Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12a10
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.45
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce... 29 0.78
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac... 28 1.4
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 27 1.8
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 27 3.2
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 26 4.2
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 4.2
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 26 5.5
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 5.5
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 25 7.3
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 29.5 bits (63), Expect = 0.45
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = -1
Query: 216 FSKGIIDVSSKIFSSIVL*QLSSCSKLL 133
+S GIID++S++ SSI + L SC+ L+
Sbjct: 126 YSSGIIDIASELHSSIPVSTLGSCTFLV 153
>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 254
Score = 28.7 bits (61), Expect = 0.78
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 140 LEHDDNC-YSTIDE--NIFDDTSIIPLEKDSFAICELCGRVGR 259
L HD YST D+ +FDD S PL ++ I C R GR
Sbjct: 9 LNHDPTVTYSTKDDADELFDDLSSSPLHENVSWISWFCSRPGR 51
>SPBC1734.09 |||NST UDP-N-acetylglucosamine
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 491 EWKDELFGCDFLAAPVSLFKHAPLHEMWDNTF 586
+W++ LF L+ P LF P+ W++ F
Sbjct: 185 DWRESLFYTHALSLPFFLFLLRPIRSQWNDLF 216
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/81 (25%), Positives = 35/81 (43%)
Frame = -2
Query: 650 NH*VFQNNYHSLYSSLQPSCPQMCYPTFHEEVHV*KDSLVQQGNRNQITHLSIHNCSQLK 471
NH + N + S SL S MC+P F + + L + IT + +C Q+
Sbjct: 21 NHGIVGNMHTSAMISLDGSVEMMCWPNF-DSPSIFARILDARAGHFSITPIEQTSCKQMY 79
Query: 470 LPIV*WDLPVNHSKWHAIAGV 408
P + H+K+++ GV
Sbjct: 80 EP----STNILHTKFYSERGV 96
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 394 QWNHPCHVICTLH*FESPINVFSSRKT 314
+WN P HV H + S I+ F +K+
Sbjct: 434 EWNKPVHVFLMRHVYHSSISGFKLKKS 460
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 430 SGMPLLELG*RLQWNHPCHVICTLH*FESPINVFSSRKTSVATK*TKFII 281
+GM L+LG + H C +C FE + +FSS + A K II
Sbjct: 416 TGMRTLDLGNPMLSMHSCREMCGSKDFEYAVVLFSSFFQNFANLEEKIII 465
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1
Query: 255 PTRPHNSHIAKLSFSK 208
P R HNS ++KLSF+K
Sbjct: 1412 PNRLHNSKVSKLSFTK 1427
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 329 KHINWRFKLMEGTDHMAGMIPLEPLPQLQQWHATLSDLQAGPIKQSAASVANSY 490
+HI W + G HMAG L H + GP +++AAS+ N Y
Sbjct: 583 EHIYW---INGGDIHMAGQFSYLSNSLLLNVHRYVESHLNGPTERTAASLTNWY 633
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 316 FFETKTH*LEIQTNGGYRSHGRDDSTGAFTPTPAMACHF 432
F + + L+++ G+ SHGRD S + T +P HF
Sbjct: 379 FMDDYVNELQLEIVPGF-SHGRDSSDTSCTESPPEPSHF 416
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 542 LFKHAPLHEMWDNTFEGMKVEVKNTDCDNYSEKLSDY 652
L +H PL E D+T +K ++ ++ D+Y K + +
Sbjct: 537 LEEHLPLSEHDDDTLANLKKDLSSSFFDHYMSKSNSW 573
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,622
Number of Sequences: 5004
Number of extensions: 60956
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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