Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12a10
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0280 - 22671786-22672208                                         30   1.9  
05_01_0397 - 3129679-3130144,3130655-3131104,3132215-3132273,313...    29   2.5  
04_04_1255 + 32119565-32119685,32120052-32120218,32120332-321205...    29   2.5  
12_01_1035 + 10656345-10656347,10656694-10656864,10656922-106577...    29   4.3  
05_03_0313 + 12200743-12200955,12201238-12201622,12201997-122022...    29   4.3  
10_02_0066 + 4871759-4871857,4872086-4872511                           28   5.7  
02_02_0714 - 13222425-13223605,13224422-13224548,13225417-132254...    28   5.7  
02_03_0056 - 14525491-14525833,14525882-14526125,14526447-145265...    28   7.6  

>03_05_0280 - 22671786-22672208
          Length = 140

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 503 ELFGC-DFLAAPVSLFKHAPLHEMWD 577
           EL GC  F A P+  F H P+ + WD
Sbjct: 6   ELIGCVTFTARPIQEFLHIPMKDKWD 31


>05_01_0397 -
           3129679-3130144,3130655-3131104,3132215-3132273,
           3133136-3133305,3134655-3134771,3134980-3135166
          Length = 482

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 497 SIHNCSQLKLPIV*WDLPVNHSKWHAIAGVGVKAPVESSLPCDLY 363
           S+ + S   +P    D P  H  WH +AG     P++S  P D +
Sbjct: 229 SLASSSSSHVPERTMDGPAYHDPWHPLAGPSDGRPLQSVQPADFH 273


>04_04_1255 +
           32119565-32119685,32120052-32120218,32120332-32120532,
           32120700-32120747,32121079-32121238,32121540-32121777,
           32121874-32122021
          Length = 360

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = +2

Query: 431 LSDLQA-GPIKQSAASVANSYEWKDELFGCDF---LAAPVSLFKHAPLHEMWDNTFEG 592
           L DLQA GP+K   A +     + D + GCD+   +AAP++     P  ++ +    G
Sbjct: 49  LKDLQALGPLKVFRADMDEEGSFDDAIAGCDYAFLVAAPMNFNSENPEKDLVEAAVNG 106


>12_01_1035 +
           10656345-10656347,10656694-10656864,10656922-10657728,
           10657881-10659092
          Length = 730

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 218 DSFAICELCGRVGRRGQFYPRNNKFCSLRCN 310
           DS   CE+CG  G  G   P+  +     CN
Sbjct: 272 DSHVTCEVCGGTGHSGNDCPKTREKAMYMCN 302


>05_03_0313 +
           12200743-12200955,12201238-12201622,12201997-12202274,
           12202359-12202976
          Length = 497

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 218 DSFAICELCGRVGRRGQFYPRNNK 289
           DS   CE+CG  G  G  YP   +
Sbjct: 161 DSHVTCEVCGNTGHSGNDYPETRE 184


>10_02_0066 + 4871759-4871857,4872086-4872511
          Length = 174

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 218 DSFAICELCGRVGRRGQFYPRNNK 289
           DS   CE+CG  G  G  YP   +
Sbjct: 140 DSHITCEVCGNTGHMGNDYPETRE 163


>02_02_0714 -
           13222425-13223605,13224422-13224548,13225417-13225461,
           13225776-13225840,13226138-13226264
          Length = 514

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
 Frame = +2

Query: 191 DTSIIPLEKDSFAICELCGRVGRRGQ-----FYPRNNKFCSLRCNASFSRRKHINW 343
           D  I  L    F ICELCG     GQ     + P+N              RKH+ W
Sbjct: 134 DIKICDLSNPRFDICELCGDARTIGQSSTVVYVPQNRASNGEEWIIRAQSRKHLPW 189


>02_03_0056 -
           14525491-14525833,14525882-14526125,14526447-14526591,
           14526757-14527121,14527323-14527722
          Length = 498

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 218 DSFAICELCGRVGRRGQFYPRNNK 289
           DS   CE+CG  G  G  YP +++
Sbjct: 82  DSHVTCEVCGGTGHFGNDYPESHE 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,329,769
Number of Sequences: 37544
Number of extensions: 361014
Number of successful extensions: 943
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)