Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12a10
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36238-5|CAA85277.1|  381|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical ...    28   6.8  
AC024202-7|AAK93868.3|  227|Caenorhabditis elegans Hypothetical ...    28   6.8  
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z36238-5|CAA85277.1|  381|Caenorhabditis elegans Hypothetical
           protein R74.6 protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 655 KVITKFFRIIITVCILHFNLHALKCVI 575
           K + KF+  + T  + H NL  +KCVI
Sbjct: 180 KGLEKFYEAVSTAFMRHVNLQVVKCVI 206


>AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical
           protein F41A4.1 protein.
          Length = 696

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +2

Query: 455 IKQSAASVANSYEWKDELFGCDFLAAPVSLFKHAPLHEMWDNTFEGMKVEVKNTDCDNYS 634
           I+   + V  SY + +    C+ + A   +   +PL  M  N F G        DC N+S
Sbjct: 235 IRSRISDVCRSYTYDNSTNECNLMWASARMLGRSPLESMKPNLFHG-----DLDDCVNFS 289

Query: 635 EK 640
            K
Sbjct: 290 LK 291


>AC024202-7|AAK93868.3|  227|Caenorhabditis elegans Hypothetical
           protein Y71H2B.11 protein.
          Length = 227

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 548 KHAPLHEMWDNTFEGMKVEVKNTDCDNYSEKL 643
           K+A     WD  F+  K EVK TD   YS KL
Sbjct: 182 KNAATSSTWDKHFDNSKYEVKTTD---YSWKL 210


>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
           protein T23H2.3 protein.
          Length = 1009

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = -1

Query: 264 PRRPTRPHNSHIAKLSFSKGIIDVSSKIFSSIVL*QLSSCSK 139
           PRRP   ++S +A++++S+ I+D +  I +     +LS CSK
Sbjct: 534 PRRPAGKNDSPLARVAWSRVILDEAHAIKN-----RLSQCSK 570


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,658,056
Number of Sequences: 27780
Number of extensions: 341854
Number of successful extensions: 796
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)