Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12a09
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0576 - 5114636-5115151,5115254-5116183,5116898-5117614,511...    29   2.4  
11_06_0549 + 24868344-24868930,24869740-24869957,24870018-248701...    28   5.5  
03_06_0336 - 33220493-33220986,33221077-33221252,33221357-332214...    28   5.5  
03_06_0290 + 32878040-32880193,32881607-32881720                       28   5.5  
02_03_0279 + 17250347-17252098                                         28   7.2  
05_02_0099 - 6582498-6582725,6583148-6583235,6583437-6583830,658...    27   9.6  
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355     27   9.6  

>08_01_0576 -
           5114636-5115151,5115254-5116183,5116898-5117614,
           5119630-5119746,5119930-5120295,5121365-5121634
          Length = 971

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 594 QHQHHYQSQFHNHP-GHYRQRCVSLAAWLSFQPPR 493
           Q Q H+  QFH HP  H ++   S A  +S  PP+
Sbjct: 681 QGQPHHPPQFHPHPHSHLQETIRSFAPSMSVAPPQ 715


>11_06_0549 +
           24868344-24868930,24869740-24869957,24870018-24870175,
           24870202-24870633,24870717-24871064
          Length = 580

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +3

Query: 246 PLASDNKAENRRSLA--RYSSGEESDLDNVNKIKDKRGRRATTGGSMLPPSV 395
           P A D   EN+  +A  +++       +N+ KIK K    ATT     P ++
Sbjct: 337 PAAKDETKENKAPVAQDKHAVAANKTKENIGKIKSKINNEATTATPRPPTTI 388


>03_06_0336 -
           33220493-33220986,33221077-33221252,33221357-33221492,
           33221731-33221894,33222902-33222969
          Length = 345

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +3

Query: 249 LASDNKAENRRSLARYSSGEES--DLDNVNKIKDK 347
           L   NK +NR SLA +SS  +S   L+N + +KDK
Sbjct: 30  LLGTNKGQNRCSLATFSSFGQSGISLNNEDLVKDK 64


>03_06_0290 + 32878040-32880193,32881607-32881720
          Length = 755

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 233 IQDHLQFLHQKFPRGSRNRHNWKSMLCQFCS 141
           +QD + +L +   RG  N  +W  ++ QFC+
Sbjct: 391 VQDSVNYLTELHSRGLVNCQSWNIVIAQFCN 421


>02_03_0279 + 17250347-17252098
          Length = 583

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 591 HQHHYQSQFHNHPGH 547
           H+HHY  Q+H+H  H
Sbjct: 367 HRHHYHYQYHHHHHH 381


>05_02_0099 -
           6582498-6582725,6583148-6583235,6583437-6583830,
           6585855-6585990,6586413-6586931
          Length = 454

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 398 ADRRWQHATTSCRSTPAFVFDLIHVV*VRLLTARVP--RQRPP 276
           +DR   H +T    T  +V     VV + LLT RVP   +RPP
Sbjct: 329 SDRAGGHVSTRVLGTQGYVAPDYGVVLLELLTGRVPVDMKRPP 371


>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
          Length = 1109

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 588 QHHYQSQFHNHPGHYRQR 535
           QH +QSQ H+H  H+ QR
Sbjct: 129 QHDHQSQRHHHRHHHHQR 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,913,259
Number of Sequences: 37544
Number of extensions: 304365
Number of successful extensions: 836
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)