Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12a09
(642 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003739-3|AAB58065.1| 166|Caenorhabditis elegans Human emerin ... 33 0.13
Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical pr... 33 0.17
AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical ... 33 0.17
Z35604-5|CAA84680.2| 269|Caenorhabditis elegans Hypothetical pr... 32 0.40
AB096001-1|BAE53417.1| 676|Caenorhabditis elegans bHLH-PAS fact... 29 3.7
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 28 4.9
Z75527-2|CAA99775.2| 636|Caenorhabditis elegans Hypothetical pr... 28 6.5
AL132948-45|CAD31822.2| 542|Caenorhabditis elegans Hypothetical... 28 6.5
AF370361-1|AAK52514.1| 636|Caenorhabditis elegans putative tran... 28 6.5
Z81074-2|CAB03038.2| 671|Caenorhabditis elegans Hypothetical pr... 27 8.6
>AF003739-3|AAB58065.1| 166|Caenorhabditis elegans Human emerin
homolog protein 1 protein.
Length = 166
Score = 33.5 bits (73), Expect = 0.13
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = +3
Query: 114 VESMSDAELRTKLAEHGFPVMPITASTRXXXXXXXXXXXDNKGRPLASDNKAE-NRRSLA 290
V ++DAELR L HG V PI A+TR D ++ N ++ N SL
Sbjct: 3 VSQLTDAELRDSLKSHGVSVGPIVATTRKLYEKKLIKLSDGSINNQSNLNDSQFNEDSLI 62
Query: 291 RYSSGEESDLDNVNKIKDKRGRRATT 368
SS ++S V + ATT
Sbjct: 63 ISSSPKKSPPQRVFQNVSAATAAATT 88
>Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +3
Query: 114 VESMSDAELRTKLAEHGFPVMPITASTR 197
VE MSDAELR +L G V P+T +TR
Sbjct: 4 VEKMSDAELRAELNVRGANVGPVTGTTR 31
>AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +3
Query: 114 VESMSDAELRTKLAEHGFPVMPITASTR 197
VE MSDAELR +L G V P+T +TR
Sbjct: 4 VEKMSDAELRAELNVRGANVGPVTGTTR 31
>Z35604-5|CAA84680.2| 269|Caenorhabditis elegans Hypothetical
protein ZK1058.5 protein.
Length = 269
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = -3
Query: 385 GNMLPPVVARRPRLSLILFTLSKSDSSPLEYRAKD 281
GNML P+VA P L L F S + LE RAK+
Sbjct: 91 GNMLFPLVAEIPNLKLFAFDFSDNAVKLLEERAKE 125
>AB096001-1|BAE53417.1| 676|Caenorhabditis elegans bHLH-PAS factor
protein.
Length = 676
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 603 FFCQHQHHYQSQFHNHPGH 547
F QHQHH Q Q + P H
Sbjct: 603 FAMQHQHHLQQQHQSQPNH 621
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
on autosome protein2 protein.
Length = 1758
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = -1
Query: 585 HHYQSQFHNHPGHYRQRCVSLAAWL-SFQPPRVVSQTSRPQIQSPYPNH 442
HH S H+HPG + S ++ L FQ P S P P H
Sbjct: 13 HHPSSSHHHHPGQQQSSSSSSSSHLQDFQSP---PSASHPYYHQQQPQH 58
>Z75527-2|CAA99775.2| 636|Caenorhabditis elegans Hypothetical
protein C15C8.2 protein.
Length = 636
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 603 FFCQHQHHYQSQFHNHPGH 547
F QHQHH Q Q + P H
Sbjct: 603 FAMQHQHHLQQQHQSQPPH 621
>AL132948-45|CAD31822.2| 542|Caenorhabditis elegans Hypothetical
protein Y39B6A.25 protein.
Length = 542
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 218 QFLHQKFPRGSRNRHNW 168
QFLHQK PRG+ W
Sbjct: 450 QFLHQKLPRGAHVHFRW 466
>AF370361-1|AAK52514.1| 636|Caenorhabditis elegans putative
transcription factor C15C8.2protein.
Length = 636
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 603 FFCQHQHHYQSQFHNHPGH 547
F QHQHH Q Q + P H
Sbjct: 603 FAMQHQHHLQQQHQSQPPH 621
>Z81074-2|CAB03038.2| 671|Caenorhabditis elegans Hypothetical
protein F32B6.2 protein.
Length = 671
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 117 ESMSDAELRTKLAEHGFPVM 176
E SDA L+ K AE G+PVM
Sbjct: 154 EDQSDANLKKKSAEIGYPVM 173
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,169,260
Number of Sequences: 27780
Number of extensions: 251269
Number of successful extensions: 798
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -