Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12a08
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...   105   4e-24
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    29   0.81 
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   7.5  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score =  105 bits (253), Expect = 4e-24
 Identities = 56/151 (37%), Positives = 79/151 (52%), Gaps = 5/151 (3%)
 Frame = +1

Query: 157 RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSD 336
           ++   G I+E I T+IPA  LI +A                 +T+K+IG Q +  YE +D
Sbjct: 69  KYTTHGSIVEFIWTLIPALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELND 128

Query: 337 F-----NNIEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPS 501
           F       + FDSY++P  +++    R L+VD               T+ DVIHS  +PS
Sbjct: 129 FVTNENEPVSFDSYMVPEEDLEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPS 188

Query: 502 LGIKVDANPGRLNQTNFFINRPGIFFGQCSE 594
           LGIK D  P RLNQ +  I+R G+F+GQCSE
Sbjct: 189 LGIKCDCIPSRLNQVSLSIDREGLFYGQCSE 219



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +2

Query: 539 IKQTSLLIDLE-FFLVNVQKICGANHSFIPIVIESISIKNFI 661
           + Q SL ID E  F     ++CG  HS +PIV++ +S+++F+
Sbjct: 200 LNQVSLSIDREGLFYGQCSELCGVLHSSMPIVVQGVSLEDFL 241


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -3

Query: 664 INKVFD*NTFNYNRYKTMISSTNFLNIDQKKFQ 566
           +NK+   N+   + ++ ++S  NF +ID+KKF+
Sbjct: 284 LNKLIQLNSAFLDEFEAIMSDLNFEDIDEKKFE 316


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 443 LFIGKIIRLSTSNSRNSLFFISLDGIIYESNSILLKSE 330
           LF+    R +T  SRN+L+FI LD     SN   + SE
Sbjct: 165 LFVRHWDRWNTG-SRNTLYFIELDKKTENSNYFEISSE 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,006,801
Number of Sequences: 5004
Number of extensions: 33778
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)