Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11p14
         (631 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1HPR3 Cluster: Ornithine decarboxylase; n=5; Endoptery...    67   3e-10
UniRef50_Q4SAD4 Cluster: Chromosome 19 SCAF14691, whole genome s...    35   1.4  
UniRef50_A5NMZ6 Cluster: Putative uncharacterized protein; n=1; ...    34   2.4  
UniRef50_UPI0000F2C16A Cluster: PREDICTED: hypothetical protein;...    33   4.3  
UniRef50_UPI000155F5F1 Cluster: PREDICTED: hypothetical protein;...    33   5.7  
UniRef50_Q27W72 Cluster: NigAIII; n=1; Streptomyces violaceusnig...    33   7.5  

>UniRef50_Q1HPR3 Cluster: Ornithine decarboxylase; n=5;
           Endopterygota|Rep: Ornithine decarboxylase - Bombyx mori
           (Silk moth)
          Length = 444

 Score = 67.3 bits (157), Expect = 3e-10
 Identities = 32/34 (94%), Positives = 32/34 (94%)
 Frame = +1

Query: 511 MKVVEEQRIXVMEGSWSPVSVIREIVXSGVQEDP 612
           MKVVEEQRI VMEGSWSPVSVIREIV SGVQEDP
Sbjct: 1   MKVVEEQRIRVMEGSWSPVSVIREIVESGVQEDP 34


>UniRef50_Q4SAD4 Cluster: Chromosome 19 SCAF14691, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 19 SCAF14691, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 1400

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +1

Query: 262 TSPQRRPALAAPCQGPLTP 318
           TSP RRP+L  PC+GPL+P
Sbjct: 886 TSPVRRPSLLMPCEGPLSP 904


>UniRef50_A5NMZ6 Cluster: Putative uncharacterized protein; n=1;
           Methylobacterium sp. 4-46|Rep: Putative uncharacterized
           protein - Methylobacterium sp. 4-46
          Length = 198

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 379 GAWSWGPTSASPQVSGECGEVASAGPGTAQPGR 281
           G +SWG   A+P   G    V++ GPG A  GR
Sbjct: 34  GRFSWGARKATPAAKGPADGVSACGPGNAGAGR 66


>UniRef50_UPI0000F2C16A Cluster: PREDICTED: hypothetical protein;
           n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
           protein - Monodelphis domestica
          Length = 166

 Score = 33.5 bits (73), Expect = 4.3
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 279 TRPG--CAVPGPADATSPHSPDTCGLALVGPQDQAP 380
           +RPG  C  P PA ++ P +P + G +L GP   AP
Sbjct: 23  SRPGLPCLPPDPASSSQPPTPGSSGSSLQGPDSPAP 58


>UniRef50_UPI000155F5F1 Cluster: PREDICTED: hypothetical protein;
           n=1; Equus caballus|Rep: PREDICTED: hypothetical protein
           - Equus caballus
          Length = 846

 Score = 33.1 bits (72), Expect = 5.7
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = -3

Query: 593 LSTISRITLTGDHDPSITXMRCSSTTFMVLSNFTWTCFLSLSRARRGPAPRSTVPFPCNV 414
           +ST  ++ L     PS    RC + +    S+ +W C   L R   G  P S  P+P   
Sbjct: 378 ISTWKKMYLKNPTPPSSISXRCXAVSARPXSSSSWAC-PPLGRTTSGTGPSSASPWPSVS 436

Query: 413 SAVRVSGVKCRRSLV 369
           S      +   RSL+
Sbjct: 437 SGEHWVSLSXLRSLI 451


>UniRef50_Q27W72 Cluster: NigAIII; n=1; Streptomyces
            violaceusniger|Rep: NigAIII - Streptomyces violaceoniger
          Length = 4083

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 300  PGPADATSPHSPDTCGLALVGPQDQAPTTLD-TANPD 407
            P P    SP  P T   AL+GP+DQAP   D  A+PD
Sbjct: 1277 PYPISVDSP--PRTASWALIGPRDQAPAAPDLPAHPD 1311


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 588,628,479
Number of Sequences: 1657284
Number of extensions: 11475172
Number of successful extensions: 34191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34158
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46466611856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)