Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11p14
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.55 
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   6.8  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   9.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 223 THTPPXXXXXXXXTSPQRRPALAAPCQGPLTPP 321
           T  PP          P+R P+L+AP   P+ PP
Sbjct: 227 TSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPP 259


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 406 SGLAVSSVVGAWSWGPTSAS 347
           SGL  SS V AW+W  T  S
Sbjct: 54  SGLISSSTVSAWTWPATLLS 73


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 406 SGLAVSSVVGAWSWGPT 356
           +GL  S+VV +W+W  T
Sbjct: 55  TGLVASAVVSSWTWAST 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,035
Number of Sequences: 5004
Number of extensions: 38218
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)