Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11p14
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0175 - 18936752-18937621,18938855-18941641                       32   0.33 
09_02_0543 + 10427321-10428315,10428440-10429154                       29   2.3  
02_02_0012 - 6092081-6092170,6092282-6092369,6093659-6094608           29   2.3  
07_03_1091 + 23899825-23900649,23900750-23900998,23901104-239011...    29   4.0  
04_03_1022 - 21778315-21779007                                         28   5.3  
11_01_0793 - 6978688-6980234,6982769-6982843,6983383-6983584           28   7.0  
08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754           28   7.0  
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604...    28   7.0  
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054...    27   9.3  

>01_05_0175 - 18936752-18937621,18938855-18941641
          Length = 1218

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 199 VWQCRAERTHTPP-XXXXXXXXTSPQRRPALAAPCQGPLTPPH 324
           VW+CR + + TPP         T+P    A AAP +    PPH
Sbjct: 57  VWRCRVKTSWTPPDSYPDFALPTAPASASAAAAPPRYDRVPPH 99


>09_02_0543 + 10427321-10428315,10428440-10429154
          Length = 569

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +3

Query: 300 PGPADATSPHSPDTCGLALVGPQDQAP 380
           PGPA A SPHSP       V P    P
Sbjct: 70  PGPAAAPSPHSPSPSNAPWVAPAADIP 96


>02_02_0012 - 6092081-6092170,6092282-6092369,6093659-6094608
          Length = 375

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = -1

Query: 412 QLSGLAVSSVVGAWSWGPTSASPQVSGECGEVASAGPGTAQPGRVYV 272
           + +G A +    AW+WGP        G C     A P  A    +Y+
Sbjct: 185 RFAGSAEAFDPAAWAWGPVQERVLDEGTCPRTCCAAPAPAAGATMYM 231


>07_03_1091 +
           23899825-23900649,23900750-23900998,23901104-23901195,
           23901413-23902193
          Length = 648

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 620 RRRGSSCTPLSTISRITLTGDHDPSITXMRCSSTTFMVLS 501
           RRRG+S +P  +    T+T + DP  +  R +   F VLS
Sbjct: 270 RRRGNSVSPSKSGPNSTITQNDDPMESVRRKAEKAFNVLS 309


>04_03_1022 - 21778315-21779007
          Length = 230

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 268 PQRRPALAAPCQGPLTPPHHIH 333
           P   PA  AP  GP  PPHH H
Sbjct: 71  PPHTPA-PAPAPGPYIPPHHPH 91


>11_01_0793 - 6978688-6980234,6982769-6982843,6983383-6983584
          Length = 607

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 433 CRFLVTFQLSGLAVSSVVGAWSWGPTSA 350
           C  LV F++ G  ++  + AW WG  SA
Sbjct: 494 CHHLVIFRVHGNTLTGNLPAWVWGQQSA 521


>08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754
          Length = 203

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -3

Query: 482 FLSLSRARRGPAPR--STVPFPC--NVSAVRVSGVKCRRSL 372
           F+ L   RR PAPR  +T+P  C   VS+V  S   CR  L
Sbjct: 42  FIELCIGRRSPAPRLSTTLPLACCHRVSSVYRSRWHCRLGL 82


>01_06_0412 +
           29159918-29160046,29160148-29160297,29160385-29160447,
           29160540-29160716,29160796-29160899,29162142-29162249,
           29162336-29162432,29162540-29162637,29162718-29162859,
           29162941-29163063,29163161-29163259
          Length = 429

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 264 EPST*TRPGCAVPGPADATSPHSPDTCGLALVGPQDQA 377
           E ST T     VP P+DAT+P+   + G A   P+  A
Sbjct: 307 ERSTATNVEIEVPVPSDATNPNIRTSMGSAAYAPERDA 344


>08_02_0880 +
           22203440-22204324,22204763-22204876,22204964-22205455,
           22205646-22205819,22206589-22206978,22209927-22210022,
           22210645-22210760,22210872-22211042,22211126-22211285,
           22211388-22211573,22211665-22211793,22211918-22211996,
           22212159-22212268
          Length = 1033

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 533 RCSSTTFMVLSNFTWTCFLSLSRARRGPAPRSTVP 429
           RCSST+  +   F W    S + A R P P    P
Sbjct: 121 RCSSTSSRIRKKFAWLRSPSPAPAPRAPTPSEPPP 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,772,853
Number of Sequences: 37544
Number of extensions: 346476
Number of successful extensions: 1141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)