Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11p14
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)               31   0.77 
SB_28417| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_31576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  

>SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)
          Length = 905

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 551 PSITXMRCSSTTFMVLSNFTWTCFLSLSR-ARRGPAPRST 435
           PS+   +C+ T F+V S F  T     +R +RR P PR+T
Sbjct: 107 PSLPEFKCNPTPFVVASCFNRTQVTKSARNSRRAPYPRNT 146


>SB_28417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = -3

Query: 617 RRGSSCTPLSTISRITLTGDHDPSITXMRCSSTTFMVLSNFTWTCFLSLSRARRGPAPRS 438
           +R  +CTP+ T+  I+ T  H P+I  +   +     L + TW   L+    +R P  R+
Sbjct: 3   KRLPTCTPV-TLPFISCTPVHPPNIATVLTLTPLEKSLVDLTWIRTLARLLEKRSPYHRA 61

Query: 437 TVP 429
             P
Sbjct: 62  IAP 64


>SB_31576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 494 TWTCFLSLSRARRGPAPRSTVPFP 423
           T  CFL+L   RR P  R  +P+P
Sbjct: 174 TKICFLNLELTRRNPTRRKFLPYP 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,416,313
Number of Sequences: 59808
Number of extensions: 361893
Number of successful extensions: 772
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)