Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11p14
(631 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ139275-1|ABA43896.1| 1313|Homo sapiens Tax1-binding protein 2 ... 31 2.5
DQ079590-1|AAZ30918.1| 858|Homo sapiens ZXD-like zinc finger pr... 31 2.5
BX284668-3|CAH70057.1| 1898|Homo sapiens ciliary rootlet coiled-... 31 2.5
BX284668-2|CAH70055.1| 2017|Homo sapiens ciliary rootlet coiled-... 31 2.5
AY936556-1|AAX23974.1| 858|Homo sapiens ZXD family zinc finger ... 31 2.5
AL049569-4|CAI20365.1| 1898|Homo sapiens ciliary rootlet coiled-... 31 2.5
AL049569-3|CAI20363.1| 2017|Homo sapiens ciliary rootlet coiled-... 31 2.5
AB007914-1|BAA32290.2| 1919|Homo sapiens KIAA0445 protein protein. 31 2.5
U82483-1|AAC13661.1| 382|Homo sapiens vascular addressin MAdCAM... 31 4.5
BC128464-1|AAI28465.1| 235|Homo sapiens myc target 1 protein. 30 5.9
BC128463-1|AAI28464.1| 235|Homo sapiens myc target 1 protein. 30 5.9
BC022556-1|AAH22556.2| 220|Homo sapiens MYCT1 protein protein. 30 5.9
AL390960-1|CAI23573.1| 235|Homo sapiens myc target 1 protein. 30 5.9
AK024922-1|BAB15035.1| 235|Homo sapiens protein ( Homo sapiens ... 30 5.9
AF527367-1|AAM88866.1| 235|Homo sapiens MTLC protein. 30 5.9
X17406-1|CAA35463.1| 600|Homo sapiens cartilage specific proteo... 30 7.8
M55172-1|AAA62824.1| 2316|Homo sapiens large aggregating cartila... 30 7.8
J05062-1|AAA35726.1| 480|Homo sapiens protein ( Human cartilage... 30 7.8
J00221-1|AAB59396.1| 339|Homo sapiens immunoglobulin alpha-2 he... 30 7.8
EF544896-1|ABQ23085.1| 126|Homo sapiens immunoglobulin heavy ch... 30 7.8
BX640854-1|CAE45921.1| 479|Homo sapiens hypothetical protein pr... 30 7.8
BX538077-1|CAD98001.1| 492|Homo sapiens hypothetical protein pr... 30 7.8
BX538066-1|CAD97996.1| 478|Homo sapiens hypothetical protein pr... 30 7.8
BC073765-1|AAH73765.1| 477|Homo sapiens IGHA2 protein protein. 30 7.8
BC066594-1|AAH66594.1| 478|Homo sapiens Unknown (protein for MG... 30 7.8
BC065733-1|AAH65733.1| 480|Homo sapiens Unknown (protein for MG... 30 7.8
AY647979-1|AAT74071.1| 340|Homo sapiens immunoglobulin alpha 2m... 30 7.8
AL389978-1|CAB97534.1| 416|Homo sapiens Immunoglobulin heavy ... 30 7.8
AK126352-1|BAC86532.1| 490|Homo sapiens protein ( Homo sapiens ... 30 7.8
AK125079-1|BAC86044.1| 477|Homo sapiens protein ( Homo sapiens ... 30 7.8
AK123975-1|BAC85740.1| 487|Homo sapiens protein ( Homo sapiens ... 30 7.8
AF262083-1|AAF79975.1| 133|Homo sapiens immunoglobulin heavy ch... 30 7.8
>DQ139275-1|ABA43896.1| 1313|Homo sapiens Tax1-binding protein 2
protein.
Length = 1313
Score = 31.5 bits (68), Expect = 2.5
Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +3
Query: 189 SPARVAVPGGTDAHXXXXXXXXXXDEPST*T-RPGCAVPGPADATSPHSPD 338
SPA VPG + PST PG P P ATSP SPD
Sbjct: 754 SPAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPD 804
>DQ079590-1|AAZ30918.1| 858|Homo sapiens ZXD-like zinc finger
protein protein.
Length = 858
Score = 31.5 bits (68), Expect = 2.5
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Frame = -1
Query: 427 FLVTFQLS-GLAVSSVVGAWSWGPTS----ASPQVSGECGEVASAGPGTAQPGRVYVEXX 263
FLV ++ G A + G+ P S AS G G A+ GPG A G V +
Sbjct: 75 FLVLLEVPHGGAAAEAAGSQEAEPGSRVNLASRPEQGPSGPAAAPGPGVAPAGAVTISSQ 134
Query: 262 XXXXXXXXXXGCASVPPGTAT 200
S PPG AT
Sbjct: 135 DLLVRLDRGVLALSAPPGPAT 155
>BX284668-3|CAH70057.1| 1898|Homo sapiens ciliary rootlet coiled-coil,
rootletin protein.
Length = 1898
Score = 31.5 bits (68), Expect = 2.5
Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +3
Query: 189 SPARVAVPGGTDAHXXXXXXXXXXDEPST*T-RPGCAVPGPADATSPHSPD 338
SPA VPG + PST PG P P ATSP SPD
Sbjct: 1332 SPAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPD 1382
>BX284668-2|CAH70055.1| 2017|Homo sapiens ciliary rootlet coiled-coil,
rootletin protein.
Length = 2017
Score = 31.5 bits (68), Expect = 2.5
Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +3
Query: 189 SPARVAVPGGTDAHXXXXXXXXXXDEPST*T-RPGCAVPGPADATSPHSPD 338
SPA VPG + PST PG P P ATSP SPD
Sbjct: 1451 SPAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPD 1501
>AY936556-1|AAX23974.1| 858|Homo sapiens ZXD family zinc finger C
protein.
Length = 858
Score = 31.5 bits (68), Expect = 2.5
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Frame = -1
Query: 427 FLVTFQLS-GLAVSSVVGAWSWGPTS----ASPQVSGECGEVASAGPGTAQPGRVYVEXX 263
FLV ++ G A + G+ P S AS G G A+ GPG A G V +
Sbjct: 75 FLVLLEVPHGGAAAEAAGSQEAEPGSRVNLASRPEQGPSGPAAAPGPGVAPAGAVTISSQ 134
Query: 262 XXXXXXXXXXGCASVPPGTAT 200
S PPG AT
Sbjct: 135 DLLVRLDRGVLALSAPPGPAT 155
>AL049569-4|CAI20365.1| 1898|Homo sapiens ciliary rootlet coiled-coil,
rootletin protein.
Length = 1898
Score = 31.5 bits (68), Expect = 2.5
Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +3
Query: 189 SPARVAVPGGTDAHXXXXXXXXXXDEPST*T-RPGCAVPGPADATSPHSPD 338
SPA VPG + PST PG P P ATSP SPD
Sbjct: 1332 SPAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPD 1382
>AL049569-3|CAI20363.1| 2017|Homo sapiens ciliary rootlet coiled-coil,
rootletin protein.
Length = 2017
Score = 31.5 bits (68), Expect = 2.5
Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +3
Query: 189 SPARVAVPGGTDAHXXXXXXXXXXDEPST*T-RPGCAVPGPADATSPHSPD 338
SPA VPG + PST PG P P ATSP SPD
Sbjct: 1451 SPAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPD 1501
>AB007914-1|BAA32290.2| 1919|Homo sapiens KIAA0445 protein protein.
Length = 1919
Score = 31.5 bits (68), Expect = 2.5
Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +3
Query: 189 SPARVAVPGGTDAHXXXXXXXXXXDEPST*T-RPGCAVPGPADATSPHSPD 338
SPA VPG + PST PG P P ATSP SPD
Sbjct: 1353 SPAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPD 1403
>U82483-1|AAC13661.1| 382|Homo sapiens vascular addressin MAdCAM-1
protein.
Length = 382
Score = 30.7 bits (66), Expect = 4.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 300 PGPADATSPHSPDTCGLALVGPQDQAPTTLDTANPD 407
P P D TSP SPDT + P +P DT +P+
Sbjct: 230 PEPPDTTSPESPDT--TSPESPDTTSPEPPDTTSPE 263
>BC128464-1|AAI28465.1| 235|Homo sapiens myc target 1 protein.
Length = 235
Score = 30.3 bits (65), Expect = 5.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 512 MVLSNFTWTCFLSLSRARRGPAPRS 438
+VL F W F+ LSR RR AP S
Sbjct: 80 LVLGGFIWAVFICLSRRRRASAPIS 104
>BC128463-1|AAI28464.1| 235|Homo sapiens myc target 1 protein.
Length = 235
Score = 30.3 bits (65), Expect = 5.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 512 MVLSNFTWTCFLSLSRARRGPAPRS 438
+VL F W F+ LSR RR AP S
Sbjct: 80 LVLGGFIWAVFICLSRRRRASAPIS 104
>BC022556-1|AAH22556.2| 220|Homo sapiens MYCT1 protein protein.
Length = 220
Score = 30.3 bits (65), Expect = 5.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 512 MVLSNFTWTCFLSLSRARRGPAPRS 438
+VL F W F+ LSR RR AP S
Sbjct: 65 LVLGGFIWAVFICLSRRRRASAPIS 89
>AL390960-1|CAI23573.1| 235|Homo sapiens myc target 1 protein.
Length = 235
Score = 30.3 bits (65), Expect = 5.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 512 MVLSNFTWTCFLSLSRARRGPAPRS 438
+VL F W F+ LSR RR AP S
Sbjct: 80 LVLGGFIWAVFICLSRRRRASAPIS 104
>AK024922-1|BAB15035.1| 235|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21269 fis, clone COL01745. ).
Length = 235
Score = 30.3 bits (65), Expect = 5.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 512 MVLSNFTWTCFLSLSRARRGPAPRS 438
+VL F W F+ LSR RR AP S
Sbjct: 80 LVLGGFIWAVFICLSRRRRASAPIS 104
>AF527367-1|AAM88866.1| 235|Homo sapiens MTLC protein.
Length = 235
Score = 30.3 bits (65), Expect = 5.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 512 MVLSNFTWTCFLSLSRARRGPAPRS 438
+VL F W F+ LSR RR AP S
Sbjct: 80 LVLGGFIWAVFICLSRRRRASAPIS 104
>X17406-1|CAA35463.1| 600|Homo sapiens cartilage specific
proteoglycan (600 AA) protein.
Length = 600
Score = 29.9 bits (64), Expect = 7.8
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 406 SGLAVSSVVGAWSWGPTSASPQVSGECGEVASAGPGTAQPG 284
SGL VS + G SA+P+VSGE ++ GT PG
Sbjct: 253 SGLGVSGSTLTFQEGEASAAPEVSGE--STTTSDVGTEAPG 291
>M55172-1|AAA62824.1| 2316|Homo sapiens large aggregating cartilage
proteoglycan core protein protein.
Length = 2316
Score = 29.9 bits (64), Expect = 7.8
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 406 SGLAVSSVVGAWSWGPTSASPQVSGECGEVASAGPGTAQPG 284
SGL VS + G SA+P+VSGE ++ GT PG
Sbjct: 2030 SGLGVSGSTLTFQEGEASAAPEVSGE--STTTSDVGTEAPG 2068
>J05062-1|AAA35726.1| 480|Homo sapiens protein ( Human
cartilage-specific proteoglycan core protein (CSPCP)
mRNA, 3' end. ).
Length = 480
Score = 29.9 bits (64), Expect = 7.8
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 406 SGLAVSSVVGAWSWGPTSASPQVSGECGEVASAGPGTAQPG 284
SGL VS + G SA+P+VSGE ++ GT PG
Sbjct: 95 SGLGVSGSTLTFQEGEASAAPEVSGE--STTTSDVGTEAPG 133
>J00221-1|AAB59396.1| 339|Homo sapiens immunoglobulin alpha-2 heavy
chain protein.
Length = 339
Score = 29.9 bits (64), Expect = 7.8
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Frame = -1
Query: 535 CVVPPQPSWCYPTLRGLVSLVYPXXXXXXXXXXLCRFLVTFQLSGLAVSSVVGAWSWGPT 356
C VPP P C+P L SL P +T L+GL +S ++W P+
Sbjct: 100 CPVPPPPPCCHPRL----SLHRP---ALEDLLLGSEANLTCTLTGLRDAS-GATFTWTPS 151
Query: 355 SASPQVSGE-------CGEVASAGPGTAQP 287
S V G C V+S PG AQP
Sbjct: 152 SGKSAVQGPPERDLCGCYSVSSVLPGCAQP 181
>EF544896-1|ABQ23085.1| 126|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 126
Score = 29.9 bits (64), Expect = 7.8
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = -3
Query: 629 GPSRRRGSSCTPLSTISRITLTGDHDPSITXMRCSSTTFMVLSNFTWTCFLSLSRARRGP 450
G + GS+ S SR+T++ D + + +R SS T + + LS + ARRGP
Sbjct: 49 GEINQSGSTNYSPSLKSRVTMSIDTSKNQSSLRLSSMTAADTAAYFCARGLSDTGARRGP 108
Query: 449 APRS 438
P++
Sbjct: 109 PPKA 112
>BX640854-1|CAE45921.1| 479|Homo sapiens hypothetical protein
protein.
Length = 479
Score = 29.9 bits (64), Expect = 7.8
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Frame = -1
Query: 535 CVVPPQPSWCYPTLRGLVSLVYPXXXXXXXXXXLCRFLVTFQLSGLAVSSVVGAWSWGPT 356
C VPP P C+P L SL P +T L+GL +S ++W P+
Sbjct: 240 CPVPPPPPCCHPRL----SLHRP---ALEDLLLGSEANLTCTLTGLRDAS-GATFTWTPS 291
Query: 355 SASPQVSGE-------CGEVASAGPGTAQP 287
S V G C V+S PG AQP
Sbjct: 292 SGKSAVQGPPERDLCGCYSVSSVLPGCAQP 321
>BX538077-1|CAD98001.1| 492|Homo sapiens hypothetical protein
protein.
Length = 492
Score = 29.9 bits (64), Expect = 7.8
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Frame = -1
Query: 535 CVVPPQPSWCYPTLRGLVSLVYPXXXXXXXXXXLCRFLVTFQLSGLAVSSVVGAWSWGPT 356
C VPP P C+P L SL P +T L+GL +S ++W P+
Sbjct: 253 CPVPPPPPCCHPRL----SLHRP---ALEDLLLGSEANLTCTLTGLRDAS-GATFTWTPS 304
Query: 355 SASPQVSGE-------CGEVASAGPGTAQP 287
S V G C V+S PG AQP
Sbjct: 305 SGKSAVQGPPERDLCGCYSVSSVLPGCAQP 334
>BX538066-1|CAD97996.1| 478|Homo sapiens hypothetical protein
protein.
Length = 478
Score = 29.9 bits (64), Expect = 7.8
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Frame = -1
Query: 535 CVVPPQPSWCYPTLRGLVSLVYPXXXXXXXXXXLCRFLVTFQLSGLAVSSVVGAWSWGPT 356
C VPP P C+P L SL P +T L+GL +S ++W P+
Sbjct: 239 CPVPPPPPCCHPRL----SLHRP---ALEDLLLGSEANLTCTLTGLRDAS-GATFTWTPS 290
Query: 355 SASPQVSGE-------CGEVASAGPGTAQP 287
S V G C V+S PG AQP
Sbjct: 291 SGKSAVQGPPERDLCGCYSVSSVLPGCAQP 320
>BC073765-1|AAH73765.1| 477|Homo sapiens IGHA2 protein protein.
Length = 477
Score = 29.9 bits (64), Expect = 7.8
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Frame = -1
Query: 535 CVVPPQPSWCYPTLRGLVSLVYPXXXXXXXXXXLCRFLVTFQLSGLAVSSVVGAWSWGPT 356
C VPP P C+P L SL P +T L+GL +S ++W P+
Sbjct: 238 CPVPPPPPCCHPRL----SLHRP---ALEDLLLGSEANLTCTLTGLRDAS-GATFTWTPS 289
Query: 355 SASPQVSGE-------CGEVASAGPGTAQP 287
S V G C V+S PG AQP
Sbjct: 290 SGKSAVQGPPERDLCGCYSVSSVLPGCAQP 319
>BC066594-1|AAH66594.1| 478|Homo sapiens Unknown (protein for
MGC:70893) protein.
Length = 478
Score = 29.9 bits (64), Expect = 7.8
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Frame = -1
Query: 535 CVVPPQPSWCYPTLRGLVSLVYPXXXXXXXXXXLCRFLVTFQLSGLAVSSVVGAWSWGPT 356
C VPP P C+P L SL P +T L+GL +S ++W P+
Sbjct: 239 CPVPPPPPCCHPRL----SLHRP---ALEDLLLGSEANLTCTLTGLRDAS-GATFTWTPS 290
Query: 355 SASPQVSGE-------CGEVASAGPGTAQP 287
S V G C V+S PG AQP
Sbjct: 291 SGKSAVQGPPERDLCGCYSVSSVLPGCAQP 320
>BC065733-1|AAH65733.1| 480|Homo sapiens Unknown (protein for
MGC:72071) protein.
Length = 480
Score = 29.9 bits (64), Expect = 7.8
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Frame = -1
Query: 535 CVVPPQPSWCYPTLRGLVSLVYPXXXXXXXXXXLCRFLVTFQLSGLAVSSVVGAWSWGPT 356
C VPP P C+P L SL P +T L+GL +S ++W P+
Sbjct: 241 CPVPPPPPCCHPRL----SLHRP---ALEDLLLGSEANLTCTLTGLRDAS-GATFTWTPS 292
Query: 355 SASPQVSGE-------CGEVASAGPGTAQP 287
S V G C V+S PG AQP
Sbjct: 293 SGKSAVQGPPERDLCGCYSVSSVLPGCAQP 322
>AY647979-1|AAT74071.1| 340|Homo sapiens immunoglobulin alpha 2m(1)
heavy chain constant region protein.
Length = 340
Score = 29.9 bits (64), Expect = 7.8
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Frame = -1
Query: 535 CVVPPQPSWCYPTLRGLVSLVYPXXXXXXXXXXLCRFLVTFQLSGLAVSSVVGAWSWGPT 356
C VPP P C+P L SL P +T L+GL +S ++W P+
Sbjct: 101 CPVPPPPPCCHPRL----SLHRP---ALEDLLLGSEANLTCTLTGLRDAS-GATFTWTPS 152
Query: 355 SASPQVSGE-------CGEVASAGPGTAQP 287
S V G C V+S PG AQP
Sbjct: 153 SGKSAVQGPPERDLCGCYSVSSVLPGCAQP 182
>AL389978-1|CAB97534.1| 416|Homo sapiens Immunoglobulin heavy
chain variant protein.
Length = 416
Score = 29.9 bits (64), Expect = 7.8
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Frame = -1
Query: 535 CVVPPQPSWCYPTLRGLVSLVYPXXXXXXXXXXLCRFLVTFQLSGLAVSSVVGAWSWGPT 356
C VPP P C+P L SL P +T L+GL +S ++W P+
Sbjct: 177 CPVPPPPPCCHPRL----SLHRP---ALEDLLLGSEANLTCTLTGLRDAS-GATFTWTPS 228
Query: 355 SASPQVSGE-------CGEVASAGPGTAQP 287
S V G C V+S PG AQP
Sbjct: 229 SGKSAVQGPPERDLCGCYSVSSVLPGCAQP 258
>AK126352-1|BAC86532.1| 490|Homo sapiens protein ( Homo sapiens
cDNA FLJ44381 fis, clone TRACH3035526, highly similar
to Ig alpha-2 chain C region. ).
Length = 490
Score = 29.9 bits (64), Expect = 7.8
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Frame = -1
Query: 535 CVVPPQPSWCYPTLRGLVSLVYPXXXXXXXXXXLCRFLVTFQLSGLAVSSVVGAWSWGPT 356
C VPP P C+P L SL P +T L+GL +S ++W P+
Sbjct: 251 CPVPPPPPCCHPRL----SLHRP---ALEDLLLGSEANLTCTLTGLRDAS-GATFTWTPS 302
Query: 355 SASPQVSGE-------CGEVASAGPGTAQP 287
S V G C V+S PG AQP
Sbjct: 303 SGKSAVQGPPERDLCGCYSVSSVLPGCAQP 332
>AK125079-1|BAC86044.1| 477|Homo sapiens protein ( Homo sapiens
cDNA FLJ43089 fis, clone COLON2000568, highly similar
to Ig alpha-2 chain C region. ).
Length = 477
Score = 29.9 bits (64), Expect = 7.8
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Frame = -1
Query: 535 CVVPPQPSWCYPTLRGLVSLVYPXXXXXXXXXXLCRFLVTFQLSGLAVSSVVGAWSWGPT 356
C VPP P C+P L SL P +T L+GL +S ++W P+
Sbjct: 238 CPVPPPPPCCHPRL----SLHRP---ALEDLLLGSEANLTCTLTGLRDAS-GATFTWTPS 289
Query: 355 SASPQVSGE-------CGEVASAGPGTAQP 287
S V G C V+S PG AQP
Sbjct: 290 SGKSAVQGPPERDLCGCYSVSSVLPGCAQP 319
>AK123975-1|BAC85740.1| 487|Homo sapiens protein ( Homo sapiens
cDNA FLJ41981 fis, clone SMINT2011888, highly similar
to Protein Tro alpha1 H,myeloma. ).
Length = 487
Score = 29.9 bits (64), Expect = 7.8
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Frame = -1
Query: 535 CVVPPQPSWCYPTLRGLVSLVYPXXXXXXXXXXLCRFLVTFQLSGLAVSSVVGAWSWGPT 356
C VPP P C+P L SL P +T L+GL +S ++W P+
Sbjct: 248 CPVPPPPPCCHPRL----SLHRP---ALEDLLLGSEANLTCTLTGLRDAS-GATFTWTPS 299
Query: 355 SASPQVSGE-------CGEVASAGPGTAQP 287
S V G C V+S PG AQP
Sbjct: 300 SGKSAVQGPPERDLCGCYSVSSVLPGCAQP 329
>AF262083-1|AAF79975.1| 133|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 133
Score = 29.9 bits (64), Expect = 7.8
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = -3
Query: 629 GPSRRRGSSCTPLSTISRITLTGDHDPSITXMRCSSTTFMVLSNFTWTCFLSLSRARRGP 450
G + GS+ S SR+T++ D + + +R SS T + + LS + ARRGP
Sbjct: 49 GEINQSGSTNYSPSLKSRVTMSIDTSKNQSSLRLSSMTAADTAAYFCARGLSDTGARRGP 108
Query: 449 APRS 438
P++
Sbjct: 109 PPKA 112
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,377,087
Number of Sequences: 237096
Number of extensions: 1997989
Number of successful extensions: 6675
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 5851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6633
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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