Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11p14
(631 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 29 2.1
Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical pr... 29 2.7
X58982-1|CAA41731.1| 498|Caenorhabditis elegans degenerin protein. 28 4.8
U58726-8|AAB00580.3| 768|Caenorhabditis elegans Mechanosensory ... 28 4.8
U53669-1|AAC47265.1| 768|Caenorhabditis elegans MEC-4 protein. 28 4.8
Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical pr... 28 6.3
AL132898-21|CAC14418.2| 617|Caenorhabditis elegans Hypothetical... 28 6.3
AL132863-12|CAC15862.2| 617|Caenorhabditis elegans Hypothetical... 28 6.3
AF160189-1|AAD45355.1| 617|Caenorhabditis elegans putative seri... 28 6.3
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 27 8.4
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = +3
Query: 177 EHRVSPARVAVPGGTDAHXXXXXXXXXXDEPST*TRPGCAVPGPADATSPHSPDT 341
+ +V+PA A P DA P+ P C PA A +P + D+
Sbjct: 294 DEQVTPAPAAAPAPADAPVEQAPVAVPAPAPAAAPAPDCGSAAPAPAAAPAATDS 348
>Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical
protein T02D1.6 protein.
Length = 433
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -1
Query: 433 CRFLVTFQLSGLAVSSVVGAWSWGPTSAS-PQVSGECGEVASAGPGTAQPGRVYV 272
C F+++ L + SV+G W +G T V G G +AS TA YV
Sbjct: 113 CDFVMSLSLPPAILDSVIGFWIFGTTMCKVHHVFGSVGRIASTFLITAMSFDRYV 167
>X58982-1|CAA41731.1| 498|Caenorhabditis elegans degenerin protein.
Length = 498
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +1
Query: 142 DNKSFKNYSIKGSTG*VRRVWQCRAERT 225
DN+ ++NY ++ +TG + + +C++ERT
Sbjct: 10 DNEHYENYDVEATTG-MNMMEECQSERT 36
>U58726-8|AAB00580.3| 768|Caenorhabditis elegans Mechanosensory
abnormality protein4 protein.
Length = 768
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +1
Query: 142 DNKSFKNYSIKGSTG*VRRVWQCRAERT 225
DN+ ++NY ++ +TG + + +C++ERT
Sbjct: 280 DNEHYENYDVEATTG-MNMMEECQSERT 306
>U53669-1|AAC47265.1| 768|Caenorhabditis elegans MEC-4 protein.
Length = 768
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +1
Query: 142 DNKSFKNYSIKGSTG*VRRVWQCRAERT 225
DN+ ++NY ++ +TG + + +C++ERT
Sbjct: 280 DNEHYENYDVEATTG-MNMMEECQSERT 306
>Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical
protein T05F1.11 protein.
Length = 676
Score = 27.9 bits (59), Expect = 6.3
Identities = 8/28 (28%), Positives = 20/28 (71%)
Frame = +1
Query: 454 PRRARDKLRKQVHVKLDNTMKVVEEQRI 537
P R RD+++++V ++ + ++ EE+R+
Sbjct: 406 PHRTRDEIKREVQMEYERRWRIEEEERL 433
>AL132898-21|CAC14418.2| 617|Caenorhabditis elegans Hypothetical
protein Y59A8B.14 protein.
Length = 617
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = +3
Query: 210 PGGTDAHXXXXXXXXXXDEPST*TRPGCAVPGPA-----DATSPHSPDTCGLALVGPQDQ 374
P G + PS+ + P CA PGPA ++T+ + +T G+A D
Sbjct: 531 PDGVEGSEDSAAPLGPQRRPSSRSMPTCAPPGPAAGNAQNSTAENGAETDGVA--SASDP 588
Query: 375 APTTLDTANP 404
PT A P
Sbjct: 589 PPTAAPGAPP 598
>AL132863-12|CAC15862.2| 617|Caenorhabditis elegans Hypothetical
protein Y59A8B.14 protein.
Length = 617
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = +3
Query: 210 PGGTDAHXXXXXXXXXXDEPST*TRPGCAVPGPA-----DATSPHSPDTCGLALVGPQDQ 374
P G + PS+ + P CA PGPA ++T+ + +T G+A D
Sbjct: 531 PDGVEGSEDSAAPLGPQRRPSSRSMPTCAPPGPAAGNAQNSTAENGAETDGVA--SASDP 588
Query: 375 APTTLDTANP 404
PT A P
Sbjct: 589 PPTAAPGAPP 598
>AF160189-1|AAD45355.1| 617|Caenorhabditis elegans putative
serine-threonine kinasePAR-4 protein.
Length = 617
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = +3
Query: 210 PGGTDAHXXXXXXXXXXDEPST*TRPGCAVPGPA-----DATSPHSPDTCGLALVGPQDQ 374
P G + PS+ + P CA PGPA ++T+ + +T G+A D
Sbjct: 531 PDGVEGSEDSAAPLGPQRRPSSRSMPTCAPPGPAAGNAQNSTAENGAETDGVA--SASDP 588
Query: 375 APTTLDTANP 404
PT A P
Sbjct: 589 PPTAAPGAPP 598
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 211 RAERTHTPPXXXXXXXXTSPQRRPALAAPCQGPLTPP 321
R +PP SPQRRP P P PP
Sbjct: 148 RTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPP 184
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,992,329
Number of Sequences: 27780
Number of extensions: 264304
Number of successful extensions: 735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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