Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11p14
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    22   5.7  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    22   5.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.9  

>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 268 PQRRPALAAPCQGPLTP 318
           P RRP    P QGP  P
Sbjct: 29  PGRRPFPTFPGQGPFNP 45


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 268 PQRRPALAAPCQGPLTP 318
           P RRP    P QGP  P
Sbjct: 15  PGRRPFPTFPGQGPFNP 31


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 375  PGLGGPLALVHKCQVNVVRWRQRALARRSQ 286
            P +   +ALV    +  +RWR R L  R Q
Sbjct: 1616 PLIVATVALVVAVVIVALRWRSRYLGDRMQ 1645


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 375  PGLGGPLALVHKCQVNVVRWRQRALARRSQ 286
            P +   +ALV    +  +RWR R L  R Q
Sbjct: 1612 PLIVATVALVVAVVIVALRWRSRYLGDRMQ 1641


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 387 VSSEPGLGGPLALV 346
           V++  G+GGP++LV
Sbjct: 180 VNASTGMGGPVSLV 193


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 339 TCGLALVGPQDQAPTT 386
           TC LA+   Q+Q P T
Sbjct: 518 TCSLAVAKQQNQVPLT 533


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,948
Number of Sequences: 438
Number of extensions: 3325
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)