Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11p10
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    27   3.5  
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    26   4.7  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   6.2  
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    25   8.2  

>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -2

Query: 378 SLIPREQNICFIVMTTESSQNNNPQIEWRIPYICK--PSQNSAFPNLVKIVTDFK 220
           S IP+   +      + S  +++P+I   +P+I    PS  ++ PN +K V+DFK
Sbjct: 47  SAIPQSNALNTTPNESTSQIDSSPKIPSAVPHISTPNPSSGASTPN-IKRVSDFK 100


>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 92  RENQVIQTNK*NEKLINNNQVLQSPTKRICLYKQV-NILHSLNNLKSVTILTRLGN-ALF 265
           + N  I   +   KLI  N +  SPT  ICL   +   +  L+ +  ++ L +     L 
Sbjct: 134 KNNVYITAEEIENKLILGNDIHFSPTGLICLENTIKGAVVPLDEVARISGLAKAHKIPLH 193

Query: 266 CDGLQIY 286
           CDG +++
Sbjct: 194 CDGARLW 200


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 86  LNRENQVIQTNK*NEKLINNNQVLQSPTKRICLYKQVNILHSLNNLKSVTI 238
           +NR  + +  +K  E  +N    +    KRI L ++  ++  LNNL S  I
Sbjct: 621 INRFRKAMIESKDGEAFLNMQSDISIVDKRILLLRRGKVITVLNNLGSYYI 671


>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 696 LQAEDVTNHSDYFNEHTYFTL*FLSQIIFSNNEFSLSF 583
           ++ +D+     ++ E   F +  + Q +F  NEFSLSF
Sbjct: 17  IRVKDLDKSLKFYTE--VFGMKLIDQWVFEENEFSLSF 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,870
Number of Sequences: 5004
Number of extensions: 57802
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)