Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11p10
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72502-12|CAI46558.2|  303|Caenorhabditis elegans Hypothetical p...    29   2.5  
U40060-7|AAA81145.2|  391|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81047-12|CAB60283.1|  322|Caenorhabditis elegans Hypothetical p...    28   5.8  

>Z72502-12|CAI46558.2|  303|Caenorhabditis elegans Hypothetical
           protein C08B6.13 protein.
          Length = 303

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 453 LKKKGYIQYLIWIIILSQF*MHLNVK 530
           +K KGYI ++IW+ ++  F  H +V+
Sbjct: 33  IKTKGYITHMIWVELVLNFCQHFSVE 58


>U40060-7|AAA81145.2|  391|Caenorhabditis elegans Hypothetical
           protein F38B6.7 protein.
          Length = 391

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -2

Query: 399 SSLDIPKSLI--PREQNICFIVMTTESSQNNNPQIEWRIPYICKPSQNSAFPNL 244
           SS D+P  L+  P E N C    T E + N+     + +   CK S   +F N+
Sbjct: 126 SSYDLPSVLLCDPTEDNACPEHFTCEQAVNHQMLTTYNMHLCCKTSTLDSFENV 179


>Z81047-12|CAB60283.1|  322|Caenorhabditis elegans Hypothetical
           protein C41G6.14 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -3

Query: 179 RFVLLGFVELDCYLLVFHFTYWFE*LDSLDSITLAHQH 66
           +F LLGF ++ C LLVFH T   E L SL  I   + +
Sbjct: 48  KFYLLGF-QISCVLLVFHATVLMEPL-SLSPICAGYSN 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,363,553
Number of Sequences: 27780
Number of extensions: 314245
Number of successful extensions: 699
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)