Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11p08
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    50   1e-07
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    48   4e-07
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ...    43   1e-05
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    42   3e-05
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po...    38   6e-04
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    28   0.45 
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb...    27   0.59 
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    25   2.4  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    25   3.2  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    25   4.2  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    25   4.2  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         24   5.5  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    24   7.3  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    23   9.6  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    23   9.6  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   9.6  

>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 49.6 bits (113), Expect = 1e-07
 Identities = 29/67 (43%), Positives = 36/67 (53%)
 Frame = +1

Query: 1   VNCVAPGIVVTKFASAITNSEAGAEKSLSNVPLKRFGRPEEIAGAVAFLASDDASYITGE 180
           VN VAPG + T   S+    E   E S   VPL R G+P E+A    FLA  D  Y+TG+
Sbjct: 217 VNAVAPGPIYTPLVSSTFPKEK-IELS-DQVPLGRMGQPVEVASCYLFLACSDGGYMTGQ 274

Query: 181 TVVVAGG 201
           T+   GG
Sbjct: 275 TLHPNGG 281


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 48.0 bits (109), Expect = 4e-07
 Identities = 27/71 (38%), Positives = 38/71 (53%)
 Frame = +1

Query: 1   VNCVAPGIVVTKFASAITNSEAGAEKSLSNVPLKRFGRPEEIAGAVAFLASDDASYITGE 180
           VN V+PG + T     +   E   +K     P  R G P+E+ GA  +LASD +SY TG 
Sbjct: 187 VNSVSPGYIDTDLT--LYADENLRKKWKEYTPQARIGLPDELPGAYLYLASDASSYCTGS 244

Query: 181 TVVVAGGAPAR 213
            ++V GG  +R
Sbjct: 245 DIIVDGGYCSR 255


>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 261

 Score = 43.2 bits (97), Expect = 1e-05
 Identities = 27/67 (40%), Positives = 36/67 (53%)
 Frame = +1

Query: 1   VNCVAPGIVVTKFASAITNSEAGAEKSLSNVPLKRFGRPEEIAGAVAFLASDDASYITGE 180
           VNCV+PG       S +T  +   E      P +R G  +EIA A  +LASD ASY +G 
Sbjct: 196 VNCVSPGYTT----SDMTGGKFHKEWE-PYTPFERNGLAKEIASAYLYLASDAASYASGT 250

Query: 181 TVVVAGG 201
            ++V GG
Sbjct: 251 NLIVDGG 257


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 41.5 bits (93), Expect = 3e-05
 Identities = 19/36 (52%), Positives = 24/36 (66%)
 Frame = +1

Query: 94  PLKRFGRPEEIAGAVAFLASDDASYITGETVVVAGG 201
           P+ R G PE++A AV FLA    S+ITG T+ V GG
Sbjct: 202 PVGRLGTPEDVARAVIFLADSKNSFITGTTLYVDGG 237


>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 37.5 bits (83), Expect = 6e-04
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +1

Query: 91  VPLKRFGRPEEIAGAVAFLASDDASYITGETVVVAGG 201
           VP KR G   E+ G   +LAS+ +S++TG  ++V GG
Sbjct: 221 VPFKRLGLTPELRGTYLYLASNASSFVTGLDLIVDGG 257


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 27.9 bits (59), Expect = 0.45
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 240 QVDSSDDSKSCGRPSSNHNSLSGDVAGVIRSQKRYGTSNFFWSP 109
           Q D SDDS+     + N+  + G V  V++   R+G     WSP
Sbjct: 819 QFDISDDSEDSKLLTINNPQIPGQVISVVKESIRHGFLG--WSP 860


>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 27.5 bits (58), Expect = 0.59
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
 Frame = +1

Query: 10  VAPGIVVTKFASAI---TNSEA-GAEKSLSNVPLKRFGR---PEEIAGAVAFLASDDASY 168
           V PG+V T    +I   +N EA G +       LK  G+   P++IA A++FLA ++   
Sbjct: 176 VRPGVVDTPMQVSIRNDSNKEAMGGDTHNFFKELKTSGQLVAPQDIAKALSFLALNNNPK 235

Query: 169 ITGETV 186
           +TG+ V
Sbjct: 236 LTGQFV 241


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 216 KSCGRPSSNHNSLSGDVAGVIRSQKRYGTSNFFWSPESFQWDIR 85
           K  G P S    LSG V    R+Q     + FF +P++   DI+
Sbjct: 138 KITGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQTILNDIK 181


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -2

Query: 313 YLYHSFIDSDASSMPLSEIRMKLISGGL*RRLKV 212
           ++ H F +   +S P++ +RM +I  G  +RL++
Sbjct: 302 HMEHVFTNLQNNSTPMTHVRMIIIPDGGVKRLRI 335


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = -1

Query: 206 GAPPATTTVSPVM*LASSEAKN--ATAPAISSGLPNLFNGTFDRLFSAPASEFVIADANF 33
           G  P TTT+ P   +AS+ ++N   T     S    L N T     S P +  V   ++ 
Sbjct: 50  GPVPGTTTIYPTSNVASNTSENYPYTGSKSLSSSSILSNSTISTSSSTPITASVPTSSSI 109

Query: 32  V--TTIP 18
           +  +TIP
Sbjct: 110 LSNSTIP 116


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 134 APAISSGLPNLFNGTFD 84
           AP+ SS  P++FNG  D
Sbjct: 212 APSFSSSFPHIFNGAKD 228


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 333 FLYLKKFIYIIHLLTPMR 280
           FLYL K  Y  H+LT +R
Sbjct: 71  FLYLSKCYYHTHILTSVR 88


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 42  CKLCDDDPGSDAVH 1
           CKL DDDP   + H
Sbjct: 212 CKLWDDDPNKSSYH 225


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = -1

Query: 227 ATTQSRAGAPPATTTVSPVM*LASSEAKNATAPAISSGLPNLFNGTFDRLFSAPASEFVI 48
           +TT + A +   ++TVS    L SS +  A   A ++     +N T   L S+  S   +
Sbjct: 234 STTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYN-TSSLLPSSTPSSTPL 292

Query: 47  ADANFVT 27
           + AN  T
Sbjct: 293 SSANSTT 299


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 249 NLFQVDSSDDSKSCGRPSSNHNSL 178
           NL+Q+  SDD KS G P  + +SL
Sbjct: 552 NLYQISRSDDIKS-GAPVLDTSSL 574


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 110 PNLFNGTFDRLFSAP 66
           P ++NG+F RLF  P
Sbjct: 169 PTVYNGSFKRLFYLP 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,429,790
Number of Sequences: 5004
Number of extensions: 27436
Number of successful extensions: 86
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)