Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11p08
         (338 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.1  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   5.4  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    21   5.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   7.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   9.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -1

Query: 221  TQSRA-GAPPATTTVSP 174
            TQ +A G PPA T +SP
Sbjct: 1494 TQGQAPGIPPAATFLSP 1510


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -1

Query: 221  TQSRA-GAPPATTTVSP 174
            TQ +A G PPA T +SP
Sbjct: 1490 TQGQAPGIPPAATFLSP 1506


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 196  QQPQQSLR*CSWRHPKPKTLRHQQ 125
            QQPQQ  +    + P+P+  + QQ
Sbjct: 1515 QQPQQQSQQPQQQQPQPQQQQQQQ 1538


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 72  GEEPIECPIEKIRETR 119
           GE+P ECP    R TR
Sbjct: 6   GEKPFECPECHKRFTR 21


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 90  CPIEKIRETR 119
           CP+EK++E R
Sbjct: 103 CPLEKLKERR 112


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 196 QQPQQSLR*CSWRHPKP 146
           Q  Q+++    WR PKP
Sbjct: 26  QPTQRTMSKIQWRKPKP 42


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 37  FASAITNSEAGAEKSLSNVPLKRFGR 114
           F   I N++       +N P+  FGR
Sbjct: 572 FCEMIHNAQVNKRSIHNNYPVHTFGR 597


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,243
Number of Sequences: 438
Number of extensions: 2124
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)