Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11p07
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   4.6  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   4.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.1  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   6.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.1  

>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +1

Query: 352 MTAYFLTHERTKTEYLHLERDDSNNVFSVGFRTTPLDSMGTP 477
           +  Y+L  ER   +  HLE  D    F  G+  T   S G P
Sbjct: 267 LNRYYL--ERLSNDLPHLEEFDWQKPFYPGYYPTMTYSNGLP 306


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 299 RLYMDSFAPKSNLYKNTI 352
           R+Y+    P  N+YKN I
Sbjct: 24  RIYLSPRTPIKNVYKNNI 41


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 303 YTWIPLHRNRIYTRI 347
           + W+PL RNR+ T I
Sbjct: 544 HPWLPLLRNRLDTLI 558


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -2

Query: 457 TELCENLQKIHYLSHLSLNANIPFWFSRGLKNKLSYCILV*IRFRCKG 314
           TEL ++ + +  L H  +  ++  W S+ L    S C +  +  R KG
Sbjct: 45  TELMDSNEPLLPLRHRRVTCDVLSWQSKWLSINHSACAIRCLAQRRKG 92


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 452 VVRKPTENTLFESSLSKCKYSVLVL 378
           +V  PT N    ++LS  +YS+L++
Sbjct: 181 LVANPTANYSASTTLSHAEYSMLLV 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,293
Number of Sequences: 438
Number of extensions: 4253
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)