Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11p06
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    27   0.22 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.8  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +3

Query: 591 VAIREEQIKAKRAEESARKI 650
           +A+ +EQ+K+K+ EES RK+
Sbjct: 365 LALDQEQLKSKKLEESMRKL 384


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 110 HSPHSVSFYPHSGESSH 160
           H  H   ++PH G S H
Sbjct: 319 HQHHPSQYHPHRGSSPH 335


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 649 IFLADSSALFAFICSSLIATECDCSISANF 560
           + +  S +L  F+C   IA +  CS S+ F
Sbjct: 246 VLVNGSWSLPGFVCDFYIAMDVTCSTSSIF 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,206
Number of Sequences: 438
Number of extensions: 2658
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)