Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11o23
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   2.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   2.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.3  

>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
 Frame = +1

Query: 190 FDWRAVVDFGLYNNLEKVEMEVYFEKEIKINKASQNTTFVVVRNN---WHHIIIRP 348
           +D + +V F L      +   VY E   K+N A +   F +       +HH   RP
Sbjct: 73  WDHKGIVYFELLPPNRTINSVVYIEHLTKLNNAIEEKRFELTNRKGVVFHHDDARP 128


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 190 FDWRAVVDFGLYNNLEKVEMEVYFEKEIKINKA 288
           +D++ +V F L +    +   VY E+  K+N A
Sbjct: 72  WDYKGIVYFELLSPNRTINSVVYIEQLTKLNNA 104


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 109 YSHFLLNTRKIRNINKYTFLTILPSQL 29
           Y    L+ +  RNI  + F T LPS L
Sbjct: 228 YQRLSLSFKLQRNIGYFVFQTYLPSIL 254


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 410 SFPLEFRIFRSNVKRSCK 357
           S  + +RIF++NVK + K
Sbjct: 514 SSKINYRIFKANVKEAVK 531


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 190 FDWRAVVDFGLYNNLEKVEMEVYFEKEIKINKA 288
           +D++ +V F L      +   VY E+  K+N A
Sbjct: 194 WDYKGIVYFELLPPNRTINSVVYIEQLTKLNNA 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,244
Number of Sequences: 438
Number of extensions: 4780
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)