Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11o14
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 289 3e-79
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 284 7e-78
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 29 0.63
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 28 1.1
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 27 2.6
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe... 27 3.4
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 26 4.5
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 26 4.5
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 26 5.9
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch... 26 5.9
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 26 5.9
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 25 7.8
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 289 bits (709), Expect = 3e-79
Identities = 143/200 (71%), Positives = 166/200 (83%)
Frame = +1
Query: 91 SEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRA 270
+ RED VY AKLAEQAERY+ MVE MK+VAS +D ELTVEERNLLSVAYKNVIGARRA
Sbjct: 4 TSREDAVYLAKLAEQAERYEGMVENMKSVAS---TDQELTVEERNLLSVAYKNVIGARRA 60
Query: 271 SWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELRDICSDILGVLDKYLIPSSQTGESK 450
SWRI+SSIEQKEE+KG ++ +I+ YR ++E+EL IC DIL VL+K+LIP++ + ESK
Sbjct: 61 SWRIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESK 120
Query: 451 VFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFS 630
VFYYKMKGDY+RYLAEFA G R+ +A+ SL YKAAS+IA EL PTHPIRLGLALNFS
Sbjct: 121 VFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFS 180
Query: 631 VFYYXILNSPDRACRLAKAA 690
VFYY ILNSPDRAC LAK A
Sbjct: 181 VFYYEILNSPDRACYLAKQA 200
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 284 bits (697), Expect = 7e-78
Identities = 139/198 (70%), Positives = 166/198 (83%)
Frame = +1
Query: 91 SEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRA 270
+ RE++VY AKLAEQAERY+EMVE MK VA N ++L+VEERNLLSVAYKN+IGARRA
Sbjct: 3 NSRENSVYLAKLAEQAERYEEMVENMKKVACSN---DKLSVEERNLLSVAYKNIIGARRA 59
Query: 271 SWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELRDICSDILGVLDKYLIPSSQTGESK 450
SWRIISSIEQKEE++G + +I+ YR ++E EL DIC D+L VL+K+LIP++ TGESK
Sbjct: 60 SWRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESK 119
Query: 451 VFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFS 630
VFYYKMKGDY+RYLAEF G KEAA++SL AYKAASDIA+ ELPPT P+RLGLALNFS
Sbjct: 120 VFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFS 179
Query: 631 VFYYXILNSPDRACRLAK 684
VFYY IL+SP+ AC LAK
Sbjct: 180 VFYYEILDSPESACHLAK 197
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 29.1 bits (62), Expect = 0.63
Identities = 21/85 (24%), Positives = 38/85 (44%)
Frame = +1
Query: 106 NVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRASWRII 285
N + +A+Q Y+E + + N R +S N NL +A K I + +
Sbjct: 779 NAHAYNVAKQQRAYEEEINRIWNAQKRGLSIN-------NLEELAKKYGINSIHDDYVES 831
Query: 286 SSIEQKEETKGAEDKLNMIRAYRSQ 360
+ +EET ++ L ++R YR +
Sbjct: 832 NEETTREETPSSDKVLRIVRLYRDK 856
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 28.3 bits (60), Expect = 1.1
Identities = 23/100 (23%), Positives = 46/100 (46%)
Frame = +1
Query: 79 SSTMSEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIG 258
SST S N ++ Q+E Y ++ + + + ++SD E +E R V +N +
Sbjct: 45 SSTRSSPASNQQNLEIVSQSEAYHKISDLDDSTSIFSISDQENILERRISEEVVRENSV- 103
Query: 259 ARRASWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELR 378
+S +SS ET+ + + L + S +K+++
Sbjct: 104 ---SSIENVSSSAVARETQSSANILVKDNHFFSHKQKKIQ 140
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 446 DSPVCELGMRYLSRTPRMSEQMSRSSFSTW 357
DSP +G R +S+ R + RSS S+W
Sbjct: 481 DSPTKVIGKRNVSKASRTGQGRKRSSRSSW 510
>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +1
Query: 556 AASDIAMT--ELPPTHPIRLGLALNFSVFYYXILNSPDRACRLAKAA 690
AA + MT +L T P LG+ + V YY PD A AK A
Sbjct: 265 AAQSVIMTTDQLLNTIPFGLGIITSNRVAYYLGAGLPDNASLTAKVA 311
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +1
Query: 334 NMIRAYRSQVEKELRDICSDILGVLDK 414
N +RA + +++K+L+D+ + +LDK
Sbjct: 243 NQLRADKKKLKKDLKDLVEEFQPILDK 269
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -2
Query: 401 PRMSEQMSRSSFSTWLRYALIMFNLSSAPFVSSFCSM 291
P ++E + +S S+W+ A ++ + + P V FC++
Sbjct: 121 PTIAEDFNDTSSSSWIGSAYVLASNAVLPAVGVFCNI 157
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -3
Query: 208 SAHCRTRCVMLHSSSPPPFRHSAQPAQLTLLYT--HYLPFPTL 86
S+H + + H P F S QLTLL + YLP P +
Sbjct: 486 SSHREKKSIYQHKEYMPDFLSSRDEFQLTLLESTWQYLPDPNV 528
>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 243 QERDRRPPRLLADHLLHRTEGRNKRRRRQIEHDQS 347
Q RD P R + HR R + RR +EH+++
Sbjct: 53 QRRDYSPARRRDRYERHRESVREESPRRPVEHERN 87
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 364 EKELRDICSDILGVLDKYLIPSSQTGESKVFYY 462
E+ELRD+ G+ YL +TG +K F +
Sbjct: 215 EEELRDLFRRFGGIQRVYLAKDKETGRAKGFAF 247
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +1
Query: 109 VYKAKLAEQAE----RYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARR 267
+YK KL E R DE+V MKN+ +N + +EL + ++N + + R
Sbjct: 202 IYKEKLRFSLESRKSRVDEIVNEMKNMCGKNPT-SELPTNYSDKTLTLWENELSSMR 257
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,265
Number of Sequences: 5004
Number of extensions: 42932
Number of successful extensions: 188
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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