Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11o10
         (279 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   2.0  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    24   3.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    24   3.5  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    24   4.6  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    23   6.1  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    23   6.1  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    23   8.0  

>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 219 HGKSQAQLPTDHLTLQFDCATASQWQNAINII 124
           H   +A L  DHL ++ D   AS++ NAI+ I
Sbjct: 270 HKLQKAFLSPDHLIVEEDFYNASKYLNAISDI 301


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 30  YHRVFTLLHGVACCDFVTM 86
           YHR F++L  V+C  + TM
Sbjct: 56  YHRFFSILSLVSCLAYFTM 74


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 125  LHKIIRFRVYGTTHGNKVTASHP 57
            L   IR+ +Y   +GNKV+ ++P
Sbjct: 1163 LFSSIRYAIYYKLYGNKVSLTYP 1185


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 244 YTDSQ*ELSWKITSTVTD 191
           Y D Q EL+WK+   +TD
Sbjct: 224 YMDRQKELAWKMRGILTD 241


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 13  N*FILSTIACLLCYTGWLAVTLLPCVVP*TRNRIILCNY 129
           N F+  TIA L    GWL  T+    +   + RI+L +Y
Sbjct: 184 NTFLSITIALLFLMVGWLCDTVGKSSLFSYKVRILLLDY 222


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
            heterochromatin assembly Hrr1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1015

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 147  WQNAINIIT*DNTVSRLRDH 88
            W +AIN +  D T+  L DH
Sbjct: 952  WWDAINTLMNDETIQGLGDH 971


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 226 ELSWKITSTVTDRSPNITI*LCHGFAVAKC 137
           E S K+T++    S N+T  L H   ++KC
Sbjct: 171 EYSEKVTASALKESNNVTSNLHHIRIISKC 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,120,222
Number of Sequences: 5004
Number of extensions: 19728
Number of successful extensions: 39
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)