Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11o10
         (279 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   2.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   2.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   3.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   6.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    19   8.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    19   8.6  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 165 CATASQWQNAIN 130
           C T  QW N+IN
Sbjct: 412 CRTPFQWDNSIN 423


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 128 MFIAFCHCEAVAQSNCNVR*SVGN 199
           +F+AF   ++  +S C+VR S  +
Sbjct: 4   VFVAFLPVKSFRESRCSVRCSAAS 27


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 186 HLTLQFDCATASQW 145
           H+T   DC+T S++
Sbjct: 958 HITTTIDCSTQSEY 971


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 260 HIYSTVH*FTVRAFMENHKHS 198
           HI++T H     A   +H+HS
Sbjct: 425 HIHATPHHHHSHAATPHHQHS 445


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 243 TLIHSKSFHGKSQAQLP 193
           +L+   + H KSQA LP
Sbjct: 283 SLLTLSTQHAKSQASLP 299


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 147 WQNAINIIT 121
           W+N +NIIT
Sbjct: 384 WENEMNIIT 392


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,639
Number of Sequences: 438
Number of extensions: 1362
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5369883
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)