Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11o08
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    30   0.37 
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    29   0.85 
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    28   1.5  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   2.0  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    27   2.6  
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom...    26   4.5  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   6.0  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    25   7.9  

>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 298 GVHRLFSSDELELLTTPTVLRFSNWATLLSKVSRIRRETYFHMITFK 158
           G+H+L+ +DEL++    T     NW  L    +    ET +H+  FK
Sbjct: 45  GIHKLYRNDELDVFKYLTTQLKDNWILL----NLCAEETVYHLELFK 87


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 247 TVLRFSNWATLLSKVSRIRRETYFHMITFKLIFTCIL 137
           T   F+N    L K S ++R++Y H+  ++L+  C L
Sbjct: 194 TAEEFANVLLKLMKASTVKRKSYSHLGDYELVTNCSL 230


>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = -2

Query: 471 CGICILYESADLCTSQLLIHCSM*WHQSKFCAQNSIVCCLSRHSYTSSSIYKMKTNEMEY 292
           CG C  + +   C  +L  H  + W ++KF     ++C   ++S T    Y+  T   +Y
Sbjct: 37  CGQCEKFYACFQCHDELNTHPFLPWRKAKFHIP-CVICGACKNSLTVEE-YR-STVHCKY 93

Query: 291 IDFFHQMNSNC*QHQQCY 238
            +  H  N  C  H   Y
Sbjct: 94  CN--HPFNPKCKNHAGYY 109


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 7/31 (22%), Positives = 23/31 (74%)
 Frame = +3

Query: 279  EKSLCTPSRWFSSYKCLSSCRNDGTNSKRWN 371
            +++LC    ++++++C+SS ++D  +++ +N
Sbjct: 1689 QEALCAKLYFYTAFECMSSLKSDSHDTEEYN 1719


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 390 SKFCAQNSIVCCLSRHSYTSSSIYKMKTNEMEY 292
           S+F A  S++C L RH    SSI       M Y
Sbjct: 8   SRFSANQSVLCLLQRHRVFFSSISVKPRKRMVY 40


>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -1

Query: 388 QVLCSKFHRLLFVPSFLHELKHL*DENQRDGVHRLFSSDELE 263
           Q L  + + L F+ S L+E +HL +EN +      F+S+E+E
Sbjct: 89  QRLYDESNSLGFISSPLNETEHLSEENLKIESSITFTSEEIE 130


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 401 YMEQWINNWLVHKSADSYK 457
           +ME W   WL H+S DSY+
Sbjct: 361 WMEIWC--WLTHRSVDSYR 377


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 534 FICSINNGFHQTSPVRIEKIISTFTPSVHSISN 632
           F CS++N      P+  + + + +TP  + +SN
Sbjct: 738 FSCSLSNRIRINVPISTDALAAQYTPIKNELSN 770


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,798
Number of Sequences: 5004
Number of extensions: 54728
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)