Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11o08
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0059 - 10701859-10701963,10702034-10702153,10702534-107026...    29   3.5  
06_03_1336 - 29424470-29424897,29425243-29429653                       29   4.7  
02_05_0175 + 26490186-26490303,26490954-26491184,26491326-264914...    29   4.7  

>01_02_0059 -
           10701859-10701963,10702034-10702153,10702534-10702609,
           10702897-10703276
          Length = 226

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +3

Query: 405 WSSGLIIGWYTSQLIHIKYKYHSNQYQKKCPTLSHIVNSLRPYFICSINNG 557
           W  G   GWY+   +       S Q Q++CP  +   N+L P +      G
Sbjct: 119 WGGGGRGGWYSGVAVPRGAAARSWQEQRRCPHKTSATNTLSPRYATRCGEG 169


>06_03_1336 - 29424470-29424897,29425243-29429653
          Length = 1612

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 418  NPLLHVMASIQVLCSKFHRLLFVPSFLHELKHL 320
            N  L  ++S+Q L   F RL F+PS LH L  L
Sbjct: 1381 NMALEHLSSLQELSFSFCRLQFLPSVLHRLVSL 1413


>02_05_0175 +
           26490186-26490303,26490954-26491184,26491326-26491406,
           26491557-26491684
          Length = 185

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +3

Query: 426 GWYTSQLIHIKYKYHSNQYQKKCPTLSHIVNSLRPYFICSINNGFHQTSPV-RIEKIIST 602
           G Y S +  +  KYH N Y       +H  + +  +F C +     Q SPV R+  +   
Sbjct: 84  GEYRSFIEKLAGKYHGNSYHLVSKNCNHFTDDVCSFFDCLLPESV-QVSPVGRVPTLRPV 142

Query: 603 FTPSVHSIS 629
               + SIS
Sbjct: 143 ADDDLDSIS 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,508,654
Number of Sequences: 37544
Number of extensions: 294692
Number of successful extensions: 652
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)