Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11o08
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1068| Best HMM Match : 7tm_1 (HMM E-Value=0)                        35   0.055
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_8327| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  
SB_40092| Best HMM Match : Lipoprotein_3 (HMM E-Value=1.9)             28   8.4  
SB_21463| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_1068| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 422

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +3

Query: 141 IHVNINLNVIMWKYVSRRIRDTFERSVAQFENRSTVGVVNXXXXXDEKSL 290
           + ++  +N +++ Y S+ IRD F+R +   +N +T+GVV      D  S+
Sbjct: 370 VFLSCPVNPLVYAYSSKHIRDAFKRGLKCKKNTATIGVVTRRMSNDASSI 419


>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2408

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = -3

Query: 416 STAPCNGINPSSVLKIPSFAVCPVIPTRAQAFIR 315
           S +PC+G+ PS +LK+ S AVC ++ T  QA  R
Sbjct: 620 SGSPCSGLVPSDLLKVLSKAVCALV-TSDQASSR 652


>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 426 GWYTSQLIHIKYKYHSNQYQKKCPTLSHIVNSLRPYFICSINNG 557
           G YT Q I      H N Y + C T     N    ++ C++ NG
Sbjct: 651 GHYTCQKISGAKICHENWYGQACTTFCEARNDSTGHYSCNLTNG 694


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 378 HRTWIDAITWSSGLIIGWYTSQLIHIKYKYH 470
           H  W+  + W   + + ++ S L H+ Y YH
Sbjct: 71  HERWLCHVIWQFHVSLLFHVSSLCHVNYVYH 101


>SB_8327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 424 IINPLLHVMASIQVLCSKFHRLLFVPSFLH 335
           ++N   HV+ ++ VLC+ F + L  P  +H
Sbjct: 304 MMNTPAHVLPAVSVLCASFLKSLLAPDAIH 333


>SB_40092| Best HMM Match : Lipoprotein_3 (HMM E-Value=1.9)
          Length = 130

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -1

Query: 403 VMASIQVLCSKFHRLLFVPSFLHELKHL*DENQRDGVHRLFS 278
           +++S+ +  +    L+F  S +HE     DE+Q+D VH+L S
Sbjct: 60  LLSSLSLPSNSVRTLVFNRSEMHEESKYLDEDQKDLVHKLKS 101


>SB_21463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1042

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 447 IHIKYKYHSNQYQKKCPTLSHIVNS 521
           + IKY+Y SN Y   C TL   V+S
Sbjct: 258 LKIKYQYLSNNYMHLCGTLESAVSS 282


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,772,823
Number of Sequences: 59808
Number of extensions: 374769
Number of successful extensions: 969
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)