Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11o08
         (700 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinestera...    25   1.7  
AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinestera...    25   1.7  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    24   4.0  
AF269156-1|AAF91401.1|   52|Anopheles gambiae transcription fact...    23   7.0  

>AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 304 VGFHLINA*ARVGMTGQTANDGIL-STELGLMPLHGA 411
           +G H ++A A VG++ Q+A  G L S  +  +P  GA
Sbjct: 51  IGSHQLSAAAGVGLSSQSAQSGSLASGVMSSVPAAGA 87


>AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 304 VGFHLINA*ARVGMTGQTANDGIL-STELGLMPLHGA 411
           +G H ++A A VG++ Q+A  G L S  +  +P  GA
Sbjct: 51  IGSHQLSAAAGVGLSSQSAQSGSLASGVMSSVPAAGA 87


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -1

Query: 280 SSDELELLTTPTVLRFSNWATLLSKVSRIRRETYFHMIT 164
           S +E+ELLT+ +V R  +W   + ++    ++T F +I+
Sbjct: 645 SIEEIELLTSDSVSRIESWMQQM-RLEIAHKKTEFLIIS 682


>AF269156-1|AAF91401.1|   52|Anopheles gambiae transcription factor
           zen protein.
          Length = 52

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = +3

Query: 435 TSQLIHIKYKYHSNQY 482
           +SQL+ ++ ++HSN+Y
Sbjct: 9   SSQLVELEKEFHSNRY 24


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 660,432
Number of Sequences: 2352
Number of extensions: 13112
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)