Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11o08
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    25   0.69 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    25   0.91 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    25   0.91 
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    25   0.91 
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    25   0.91 
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    24   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.8  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   4.9  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   4.9  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   4.9  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   4.9  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   8.5  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 456 KYKYHSNQYQKKCPTLSHIVN 518
           KY Y++N Y KK    ++I+N
Sbjct: 103 KYNYNNNNYNKKLYYKNYIIN 123


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 456 KYKYHSNQYQKKCPTLSHIVN 518
           KY Y++N Y   C  L + +N
Sbjct: 97  KYNYNNNNYNNNCKKLYYNIN 117


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 456 KYKYHSNQYQKKCPTLSHIVN 518
           KY Y++N Y   C  L + +N
Sbjct: 97  KYNYNNNNYNNNCKKLYYNIN 117


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 456 KYKYHSNQYQKKCPTLSHIVN 518
           KY Y++N Y   C  L + +N
Sbjct: 97  KYNYNNNNYNNNCKKLYYNIN 117


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 456 KYKYHSNQYQKKCPTLSHIVN 518
           KY Y++N Y   C  L + +N
Sbjct: 97  KYNYNNNNYNNNCKKLYYNIN 117


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 459 YKYHSNQYQKKCPTLSHIVN 518
           YKY+ N Y KK    ++I+N
Sbjct: 329 YKYNYNNYNKKLYYKNYIIN 348


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -2

Query: 375 QNSIVCCLS--RHSYTSSSIYKMKTNEME 295
           Q + VC  S  R ++TS   Y+M T EM+
Sbjct: 388 QETHVCFFSLLRDAFTSKGEYRMSTGEMK 416


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 420 IIGWYTSQLIHIKYKYHSNQYQKKCPTLSHIVNSLR 527
           IIG     +I + YK H  + QKK     H  +  R
Sbjct: 834 IIGGIGLIIIEVAYKKHQIRKQKKMELARHAADKWR 869


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +3

Query: 420 IIGWYTSQLIH---IKYKYHSNQYQKK 491
           II   ++  IH    KY Y++N Y KK
Sbjct: 81  IISSLSNNTIHNNNYKYNYNNNNYNKK 107


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +3

Query: 420 IIGWYTSQLIH---IKYKYHSNQYQKK 491
           II   ++  IH    KY Y++N Y KK
Sbjct: 81  IISSLSNNTIHNNNYKYNYNNNNYNKK 107


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +3

Query: 420 IIGWYTSQLIH---IKYKYHSNQYQKK 491
           II   ++  IH    KY Y++N Y KK
Sbjct: 81  IISSLSNNTIHNNNYKYNYNNNNYNKK 107


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +3

Query: 420 IIGWYTSQLIH---IKYKYHSNQYQKK 491
           II   ++  IH    KY Y++N Y KK
Sbjct: 81  IISSLSNNTIHNNNYKYNYNNNNYNKK 107


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +3

Query: 465 YHSNQYQKKCPTLSHI 512
           Y++N Y++ C  ++HI
Sbjct: 94  YNNNNYKQLCYNINHI 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,821
Number of Sequences: 438
Number of extensions: 3689
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)