Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11n23
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    27   0.89 
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    24   4.7  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    24   6.3  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    24   6.3  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    24   6.3  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    23   8.3  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    23   8.3  
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    23   8.3  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    23   8.3  

>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 26.6 bits (56), Expect = 0.89
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 120 ALGDLHLTTINNEASLQHFSN*ATSS 43
           A+  +H+  + NE++LQHF + A SS
Sbjct: 138 AIDIIHIGELQNESALQHFIDAANSS 163


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 152 NNEEFKKICTEEYLKERSEYRRTGV 226
           N    KKI  EE  K+R   +R+GV
Sbjct: 99  NANSIKKISLEEVEKQRKAIKRSGV 123


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 168  LNSSLLYQFDRQSFKAALGDLHLTTINNE 82
            LNS+L+   +     AAL D ++T IN++
Sbjct: 1709 LNSALINDIEGIGDMAALNDNYMTAINDD 1737


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 171 FLNSSLLYQFDRQSFKAALGDLHLTTINNEASLQ 70
           F +SSLL  +D       LG+L+L    N   L+
Sbjct: 292 FHDSSLLLIYDFYPCTTTLGELYLNNSKNSVKLE 325


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 167  KKICTEEYLKERSEYRRTGVKKAI 238
            +K C E YL+E++    T ++K I
Sbjct: 987  RKFCKENYLREKALEEVTNLRKQI 1010


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 77  DASLLMVVKCRSPNAALKDCLSNWYNNEEFKKICTEEYL 193
           DA   ++ KC    A + + + +W+N  + KK+  E++L
Sbjct: 353 DAVDSLIAKCERYGAMISNTMRSWHNLFDDKKM--EQFL 389


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 89  LMVVKCRSPNAALKDCLS-NWYNNEEFKKI 175
           L++  C +P  A  DC++   YN+E  K++
Sbjct: 214 LVINACINPTTATLDCVNGELYNDESAKEL 243


>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 5   KLIREKAKQEKCIEEVAQFEKCCKDAS 85
           K + +  K E CIEE      C +D +
Sbjct: 179 KKVEQGDKSEDCIEEFFHLYHCARDCA 205


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 137 LSNWYNNEEFKKICTEEYLKER 202
           +++ Y+NE++KK  T E LK+R
Sbjct: 124 IADRYDNEKYKKHRTLEDLKDR 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 949,794
Number of Sequences: 5004
Number of extensions: 15654
Number of successful extensions: 55
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)