Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11n04
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   3.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   3.7  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   3.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.5  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 385 YNNFIKKEIYIIYIVN 432
           YNN+ KK  Y  YI+N
Sbjct: 97  YNNYNKKLYYKNYIIN 112


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 385 YNNFIKKEIYIIYIVN 432
           YNN+ KK  Y  YI+N
Sbjct: 338 YNNYNKKLYYKNYIIN 353


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 385 YNNFIKKEIYIIYIVN 432
           YNN+ KK  Y  YI+N
Sbjct: 333 YNNYNKKLYYKNYIIN 348


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 619 SLVYQKHVFLLII*SXIRPTDIFI 690
           S++   HVF L++   I PT + +
Sbjct: 281 SILISLHVFFLLVVEIIPPTSLVV 304


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 619 SLVYQKHVFLLII*SXIRPTDIFI 690
           S++   HVF L++   I PT + +
Sbjct: 281 SILISLHVFFLLVVEIIPPTSLVV 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,563
Number of Sequences: 438
Number of extensions: 1289
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)